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# Most of these are listed as relative paths to allow for https/ssh matching with the primary Rosetta repo
# But we do explicitly specify RosettaCommons, to allow things to work for forks
############################
# External Modules
############################
[submodule "source/external/msgpack/msgpack-c.upstream"]
path = source/external/msgpack/msgpack-c.upstream
url = https://github.com/msgpack/msgpack-c.git
[submodule "source/external/c-cmaes/c-cmaes"]
path = source/external/c-cmaes/c-cmaes
url = https://github.com/CMA-ES/c-cmaes.git
[submodule "source/external/libzmq"]
path = source/external/libzmq
url = ../../RosettaCommons/libzmq.git
[submodule "source/external/mmtf/mmtf-cpp"]
path = source/external/mmtf/mmtf-cpp
url = ../../RosettaCommons/mmtf-cpp.git
[submodule "source/external/rdkit/rdkit.upstream"]
path = source/external/rdkit/rdkit.upstream
url = ../../RosettaCommons/rdkit.git
[submodule "source/external/bcl"]
path = source/external/bcl
url = https://github.com/RosettaCommons/bcl_rosetta
branch = bcl_rosetta
############################
# Boost Modules
############################
# Rosetta forks
[submodule "source/external/boost_submod/integer"]
path = source/external/boost_submod/integer
url = https://github.com/RosettaCommons/boost_integer.git
[submodule "source/external/boost_submod/lexical_cast"]
path = source/external/boost_submod/lexical_cast
url = https://github.com/RosettaCommons/boost_lexical_cast.git
[submodule "source/external/boost_submod/multi_index"]
path = source/external/boost_submod/multi_index
url = https://github.com/RosettaCommons/boost_multi_index.git
# Original boost modules
[submodule "source/external/boost_submod/accumulators"]
path = source/external/boost_submod/accumulators
url = https://github.com/boostorg/accumulators.git
[submodule "source/external/boost_submod/algorithm"]
path = source/external/boost_submod/algorithm
url = https://github.com/boostorg/algorithm.git
[submodule "source/external/boost_submod/any"]
path = source/external/boost_submod/any
url = https://github.com/boostorg/any.git
[submodule "source/external/boost_submod/array"]
path = source/external/boost_submod/array
url = https://github.com/boostorg/array.git
[submodule "source/external/boost_submod/assert"]
path = source/external/boost_submod/assert
url = https://github.com/boostorg/assert.git
[submodule "source/external/boost_submod/assign"]
path = source/external/boost_submod/assign
url = https://github.com/boostorg/assign.git
[submodule "source/external/boost_submod/atomic"]
path = source/external/boost_submod/atomic
url = https://github.com/boostorg/atomic.git
[submodule "source/external/boost_submod/bimap"]
path = source/external/boost_submod/bimap
url = https://github.com/boostorg/bimap.git
[submodule "source/external/boost_submod/bind"]
path = source/external/boost_submod/bind
url = https://github.com/boostorg/bind.git
[submodule "source/external/boost_submod/chrono"]
path = source/external/boost_submod/chrono
url = https://github.com/boostorg/chrono.git
[submodule "source/external/boost_submod/circular_buffer"]
path = source/external/boost_submod/circular_buffer
url = https://github.com/boostorg/circular_buffer.git
[submodule "source/external/boost_submod/compute"]
path = source/external/boost_submod/compute
url = https://github.com/boostorg/compute.git
[submodule "source/external/boost_submod/concept_check"]
path = source/external/boost_submod/concept_check
url = https://github.com/boostorg/concept_check.git
[submodule "source/external/boost_submod/config"]
path = source/external/boost_submod/config
url = https://github.com/boostorg/config.git
[submodule "source/external/boost_submod/container"]
path = source/external/boost_submod/container
url = https://github.com/boostorg/container.git
[submodule "source/external/boost_submod/container_hash"]
path = source/external/boost_submod/container_hash
url = https://github.com/boostorg/container_hash.git
[submodule "source/external/boost_submod/conversion"]
path = source/external/boost_submod/conversion
url = https://github.com/boostorg/conversion.git
[submodule "source/external/boost_submod/core"]
path = source/external/boost_submod/core
url = https://github.com/boostorg/core.git
[submodule "source/external/boost_submod/date_time"]
path = source/external/boost_submod/date_time
url = https://github.com/boostorg/date_time.git
[submodule "source/external/boost_submod/detail"]
path = source/external/boost_submod/detail
url = https://github.com/boostorg/detail.git
[submodule "source/external/boost_submod/dynamic_bitset"]
path = source/external/boost_submod/dynamic_bitset
url = https://github.com/boostorg/dynamic_bitset.git
[submodule "source/external/boost_submod/endian"]
path = source/external/boost_submod/endian
url = https://github.com/boostorg/endian.git
[submodule "source/external/boost_submod/exception"]
path = source/external/boost_submod/exception
url = https://github.com/boostorg/exception.git
[submodule "source/external/boost_submod/filesystem"]
path = source/external/boost_submod/filesystem
url = https://github.com/boostorg/filesystem.git
[submodule "source/external/boost_submod/foreach"]
path = source/external/boost_submod/foreach
url = https://github.com/boostorg/foreach.git
[submodule "source/external/boost_submod/format"]
path = source/external/boost_submod/format
url = https://github.com/boostorg/format.git
[submodule "source/external/boost_submod/function"]
path = source/external/boost_submod/function
url = https://github.com/boostorg/function.git
[submodule "source/external/boost_submod/functional"]
path = source/external/boost_submod/functional
url = https://github.com/boostorg/functional.git
[submodule "source/external/boost_submod/function_types"]
path = source/external/boost_submod/function_types
url = https://github.com/boostorg/function_types.git
[submodule "source/external/boost_submod/fusion"]
path = source/external/boost_submod/fusion
url = https://github.com/boostorg/fusion.git
[submodule "source/external/boost_submod/geometry"]
path = source/external/boost_submod/geometry
url = https://github.com/boostorg/geometry.git
[submodule "source/external/boost_submod/graph"]
path = source/external/boost_submod/graph
url = https://github.com/boostorg/graph.git
[submodule "source/external/boost_submod/interval"]
path = source/external/boost_submod/interval
url = https://github.com/boostorg/interval.git
[submodule "source/external/boost_submod/intrusive"]
path = source/external/boost_submod/intrusive
url = https://github.com/boostorg/intrusive.git
[submodule "source/external/boost_submod/io"]
path = source/external/boost_submod/io
url = https://github.com/boostorg/io.git
[submodule "source/external/boost_submod/iostreams"]
path = source/external/boost_submod/iostreams
url = https://github.com/boostorg/iostreams.git
[submodule "source/external/boost_submod/iterator"]
path = source/external/boost_submod/iterator
url = https://github.com/boostorg/iterator.git
[submodule "source/external/boost_submod/locale"]
path = source/external/boost_submod/locale
url = https://github.com/boostorg/locale.git
[submodule "source/external/boost_submod/math"]
path = source/external/boost_submod/math
url = https://github.com/boostorg/math.git
[submodule "source/external/boost_submod/move"]
path = source/external/boost_submod/move
url = https://github.com/boostorg/move.git
[submodule "source/external/boost_submod/mp11"]
path = source/external/boost_submod/mp11
url = https://github.com/boostorg/mp11.git
[submodule "source/external/boost_submod/mpi"]
path = source/external/boost_submod/mpi
url = https://github.com/boostorg/mpi.git
[submodule "source/external/boost_submod/mpl"]
path = source/external/boost_submod/mpl
url = https://github.com/boostorg/mpl.git
[submodule "source/external/boost_submod/multiprecision"]
path = source/external/boost_submod/multiprecision
url = https://github.com/boostorg/multiprecision.git
[submodule "source/external/boost_submod/numeric_conversion"]
path = source/external/boost_submod/numeric_conversion
url = https://github.com/boostorg/numeric_conversion.git
[submodule "source/external/boost_submod/optional"]
path = source/external/boost_submod/optional
url = https://github.com/boostorg/optional.git
[submodule "source/external/boost_submod/parameter"]
path = source/external/boost_submod/parameter
url = https://github.com/boostorg/parameter.git
[submodule "source/external/boost_submod/phoenix"]
path = source/external/boost_submod/phoenix
url = https://github.com/boostorg/phoenix.git
[submodule "source/external/boost_submod/pool"]
path = source/external/boost_submod/pool
url = https://github.com/boostorg/pool.git
[submodule "source/external/boost_submod/predef"]
path = source/external/boost_submod/predef
url = https://github.com/boostorg/predef.git
[submodule "source/external/boost_submod/preprocessor"]
path = source/external/boost_submod/preprocessor
url = https://github.com/boostorg/preprocessor.git
[submodule "source/external/boost_submod/property_map"]
path = source/external/boost_submod/property_map
url = https://github.com/boostorg/property_map.git
[submodule "source/external/boost_submod/property_tree"]
path = source/external/boost_submod/property_tree
url = https://github.com/boostorg/property_tree.git
[submodule "source/external/boost_submod/proto"]
path = source/external/boost_submod/proto
url = https://github.com/boostorg/proto.git
[submodule "source/external/boost_submod/ptr_container"]
path = source/external/boost_submod/ptr_container
url = https://github.com/boostorg/ptr_container.git
[submodule "source/external/boost_submod/python"]
path = source/external/boost_submod/python
url = https://github.com/boostorg/python.git
[submodule "source/external/boost_submod/qvm"]
path = source/external/boost_submod/qvm
url = https://github.com/boostorg/qvm.git
[submodule "source/external/boost_submod/random"]
path = source/external/boost_submod/random
url = https://github.com/boostorg/random.git
[submodule "source/external/boost_submod/range"]
path = source/external/boost_submod/range
url = https://github.com/boostorg/range.git
[submodule "source/external/boost_submod/ratio"]
path = source/external/boost_submod/ratio
url = https://github.com/boostorg/ratio.git
[submodule "source/external/boost_submod/rational"]
path = source/external/boost_submod/rational
url = https://github.com/boostorg/rational.git
[submodule "source/external/boost_submod/regex"]
path = source/external/boost_submod/regex
url = https://github.com/boostorg/regex.git
[submodule "source/external/boost_submod/serialization"]
path = source/external/boost_submod/serialization
url = https://github.com/boostorg/serialization.git
[submodule "source/external/boost_submod/smart_ptr"]
path = source/external/boost_submod/smart_ptr
url = https://github.com/boostorg/smart_ptr.git
[submodule "source/external/boost_submod/spirit"]
path = source/external/boost_submod/spirit
url = https://github.com/boostorg/spirit.git
[submodule "source/external/boost_submod/static_assert"]
path = source/external/boost_submod/static_assert
url = https://github.com/boostorg/static_assert.git
[submodule "source/external/boost_submod/system"]
path = source/external/boost_submod/system
url = https://github.com/boostorg/system.git
[submodule "source/external/boost_submod/thread"]
path = source/external/boost_submod/thread
url = https://github.com/boostorg/thread.git
[submodule "source/external/boost_submod/throw_exception"]
path = source/external/boost_submod/throw_exception
url = https://github.com/boostorg/throw_exception.git
[submodule "source/external/boost_submod/timer"]
path = source/external/boost_submod/timer
url = https://github.com/boostorg/timer.git
[submodule "source/external/boost_submod/tokenizer"]
path = source/external/boost_submod/tokenizer
url = https://github.com/boostorg/tokenizer.git
[submodule "source/external/boost_submod/tti"]
path = source/external/boost_submod/tti
url = https://github.com/boostorg/tti.git
[submodule "source/external/boost_submod/tuple"]
path = source/external/boost_submod/tuple
url = https://github.com/boostorg/tuple.git
[submodule "source/external/boost_submod/type_index"]
path = source/external/boost_submod/type_index
url = https://github.com/boostorg/type_index.git
[submodule "source/external/boost_submod/typeof"]
path = source/external/boost_submod/typeof
url = https://github.com/boostorg/typeof.git
[submodule "source/external/boost_submod/type_traits"]
path = source/external/boost_submod/type_traits
url = https://github.com/boostorg/type_traits.git
[submodule "source/external/boost_submod/ublas"]
path = source/external/boost_submod/ublas
url = https://github.com/boostorg/ublas.git
[submodule "source/external/boost_submod/unordered"]
path = source/external/boost_submod/unordered
url = https://github.com/boostorg/unordered.git
[submodule "source/external/boost_submod/utility"]
path = source/external/boost_submod/utility
url = https://github.com/boostorg/utility.git
[submodule "source/external/boost_submod/uuid"]
path = source/external/boost_submod/uuid
url = https://github.com/boostorg/uuid.git
[submodule "source/external/boost_submod/variant"]
path = source/external/boost_submod/variant
url = https://github.com/boostorg/variant.git
[submodule "source/external/boost_submod/winapi"]
path = source/external/boost_submod/winapi
url = https://github.com/boostorg/winapi.git
[submodule "source/external/boost_submod/xpressive"]
path = source/external/boost_submod/xpressive
url = https://github.com/boostorg/xpressive.git
[submodule "source/external/boost_submod/crc"]
path = source/external/boost_submod/crc
url = https://github.com/boostorg/crc.git
[submodule "source/external/boost_submod/flyweight"]
path = source/external/boost_submod/flyweight
url = https://github.com/boostorg/flyweight.git
[submodule "source/external/boost_submod/multi_array"]
path = source/external/boost_submod/multi_array
url = https://github.com/boostorg/multi_array.git
############################
# PyRosetta-build-related
###########################
[submodule "source/src/python/PyRosetta/binder"]
path = source/src/python/PyRosetta/binder
url = ../../RosettaCommons/binder.git
[submodule "source/external/pybind11"]
path = source/external/pybind11
url = ../../RosettaCommons/pybind11.git
###########################
# Rosetta modules
###########################
[submodule "tools"]
path = tools
url = ../../RosettaCommons/tools.git
[submodule "demos"]
path = demos
url = ../../RosettaCommons/demos.git
[submodule "documentation"]
path = documentation
url = ../../RosettaCommons/documentation.git
[submodule "database/additional_protocol_data"]
path = database/additional_protocol_data
url = ../../RosettaCommons/additional_protocol_data.git
[submodule "tests/scientific/data"]
path = tests/scientific/data
url = ../../RosettaCommons/scientific_benchmark_data.git
[submodule "rosetta_scripts_scripts"]
path = rosetta_scripts_scripts
url = ../../RosettaCommons/rosetta_scripts_scripts.git
[submodule "pyrosetta_scripts"]
path = pyrosetta_scripts
url = ../../RosettaCommons/pyrosetta_scripts.git
[submodule "PyRosetta.notebooks"]
path = PyRosetta.notebooks
url = ../../RosettaCommons/PyRosetta.notebooks.git
############################
[submodule "database/protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule"]
path = database/protocol_data/tensorflow_graphs/tensorflow_graph_repo_submodule
url = ../../RosettaCommons/tensorflow_graphs.git