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Document JSON.gz files, and Transcript format #77

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davmlaw opened this issue Mar 12, 2024 · 0 comments
Open

Document JSON.gz files, and Transcript format #77

davmlaw opened this issue Mar 12, 2024 · 0 comments

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@davmlaw
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davmlaw commented Mar 12, 2024

https://github.com/SACGF/cdot/wiki/Transcript-JSON-format

Maybe break into the JSON.gz (ie all the keys) and the transcript details (which is in REST)

Be sure to document strangeness, ie:

In the JSON - we store the gene info using the ID (eg RefSeq 80167) as key

When we build the data from UTA (your example has "url": "postgresql://uta.biocommons.org/uta_20210129" - we can't know they ID, only the symbol. So we make up a fake symbol

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