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When working with NPT simulations and jax_md, fractional coordinates needs to be used for the neighborlist. PySAGES should extract the box size (box = simulate.npt_box(state)) and rescale the positions to correctly update the neighborlist.
The text was updated successfully, but these errors were encountered:
When working with NPT simulations and jax_md, fractional coordinates needs to be used for the neighborlist. PySAGES should extract the box size (
box = simulate.npt_box(state)
) and rescale the positions to correctly update the neighborlist.The text was updated successfully, but these errors were encountered: