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Genes in CMSclassifier #6

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simeenz opened this issue Nov 17, 2017 · 1 comment
Open

Genes in CMSclassifier #6

simeenz opened this issue Nov 17, 2017 · 1 comment

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@simeenz
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simeenz commented Nov 17, 2017 •
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Hi-
@jguinney
Where can I find a list of the genes used in this CMSclassifier?
Thanks!
@Flaemmle
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Flaemmle commented Dec 7, 2017

@simeenz
If it is still a topic for you: you can either use
CMSclassifier::listModelGenes("SSP" or "RF") to get the list of genes used.
Furthermore you might want to investigate some of the weights further, that you can do via the Centroids dataset e.g.

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@simeenz @Flaemmle