_config.yml

# Welcome to Jekyll!
#
# This config file is meant for settings that affect your whole blog, values
# which you are expected to set up once and rarely edit after that. If you find
# yourself editing this file very often, consider using Jekyll's data files
# feature for the data you need to update frequently.
#
# For technical reasons, this file is *NOT* reloaded automatically when you use
# 'bundle exec jekyll serve'. If you change this file, please restart the server process.

# Site settings
# These are used to personalize your new site. If you look in the HTML files,
# you will see them accessed via {{ site.title }}, {{ site.email }}, and so on.
# You can create any custom variable you would like, and they will be accessible
# in the templates via {{ site.myvariable }}.
title: "Galaxy Europe"
description: The European Galaxy Instance
email: contact@usegalaxy.eu
baseurl: "/" # the subpath of your site, e.g. /blog
url: "https://galaxyproject.eu" # the base hostname & protocol for your site, e.g. https://example.com
mastodon_server: "bawü.social"
mastodon_username: "galaxyfreiburg"
github_username: usegalaxy-eu
blurb:
    UseGalaxy.eu is maintained largely by the [Freiburg Galaxy
    Team](/freiburg/) but also collectively by groups and individuals from across
    Europe. All of the member sites in this repository contribute to the
    European Galaxy Project.

    For **acknowledgement**, please refer to the [About](/about) section.

    All content on this site is available under
    [CC0-1.0](https://creativecommons.org/share-your-work/public-domain/cc0/)
    unless otherwise specified.

sass:
  sass_dir: assets/css

# Build settings
markdown: kramdown
kramdown:
  toc_levels: 1..2
#theme: minima
plugins:
  - jekyll-feed
  - jekyll/scholar
  - jekyll-twitter-plugin
#  - jekyll-analytics

scholar:
  style: bioinformatics
  group_by: year
  order: descending
  sort_by: year
  group_order: descending

citation:
    citation_style: apa
    citation_locale: en

# Requires new release of jekyll_analytics
#jekyll_analytics:
  #Plausible:
    #domain: 'galaxyproject.eu'   # The domain configured in plausible
    #source: 'https://plausible.galaxyproject.eu/js/plausible.js' # The source of the javascript

team_sites:
    freiburg:
      name: Freiburg
      url: /freiburg/
      email: contact@usegalaxy.eu
      mastodon_server: "bawü.social"
      mastodon_username: "galaxyfreiburg"
      github_username: usegalaxy-eu
      private_news: true
      url: "https://usegalaxy.eu/freiburg/"
      galaxy_server: "https://usegalaxy.eu"
      blurb: |
        The [Freiburg Galaxy Team](/freiburg/people) is headed by Björn Grüning
        and is part of the [Bioinformatics Group
        Freiburg](http://www.bioinf.uni-freiburg.de), headed by Prof. Dr. Rolf
        Backofen.

        The team is part of [de.NBI](https://www.denbi.de) and
        [ELIXIR](https://www.elixir-europe.org) and largely funded by
        [DFG](http://dfg.de/) and [BMBF](https://www.bmbf.de). All content on
        this site is available under [CC0-1.0](https://creativecommons.org/share-your-work/public-domain/cc0/),
        unless otherwise specified.
    erasmusmc:
      name: Erasmus MC
      url: /erasmusmc/
      email: erasmusmc@usegalaxy.eu
      twitter_username: erasmusmc
      github_username: erasmusmc-bioinformatics
      private_news: true
      url: "https://www.erasmusmc.nl/bioinformatica/"
      galaxy_server: "https://bioinf-galaxian.erasmusmc.nl/galaxy/"
      blurb: |
          The EMC Galaxian server is maintained by the [Bioinformatics group](https://www.erasmusmc.nl/bioinformatica)
          in the [department of Pathology](https://www.erasmusmc.nl/pathologie) of the
          [Erasmus Medical Center](https://www.erasmusmc.nl), Rotterdam, The Netherlands.

          To inquire about this Galaxy server, increasing your disk quotum, or possibilities for collaborative
          projects, please contact one of our [team](/erasmusmc/people)
    belgium:
      name: VIB
      url: /vib/
      #email:
      #twitter_username: erasmusmc
      #github_username: erasmusmc-bioinformatics
      private_news: true
      url: "https://www.usegalaxy.be/"
      galaxy_server: "https://www.usegalaxy.be/"
      blurb: |
        Welcome to the Galaxy Instance of VIB - UGent Hosted at VSC (Flemish Supercomputer Centre)
    pasteur:
      name: Pasteur
      url: /pasteur/
      #email:
      #twitter_username:
      #github_username:
      private_news: true
      url: "https://galaxy.pasteur.fr/"
      galaxy_server: "https://galaxy.pasteur.fr/"
      blurb: ""
    genouest:
      name: GenOuest
      url: /genouest/
      email: support@genouest.org
      twitter_username: GenOuest
      github_username: genouest
      private_news: true
      url: "https://galaxy.genouest.org/"
      galaxy_server: "https://galaxy.genouest.org/"
      blurb: ""
    elixir-it:
      name: "ELIXIR-IT/Laniakea"
      url: /elixir-it/
      email: laniakea.helpdesk@gmail.com
      #twitter_username:
      github_username: Laniakea-elixir-it
      private_news: true
      url: "https://laniakea-elixir-it.github.io/"
      #galaxy_server: "https://galaxy.genouest.org/"
      blurb: |
        [Laniakea](https://laniakea-elixir-it.github.io/) has been developed in the framework of the [INDIGO-Datacloud](https://www.indigo-datacloud.eu/) project funded by the European Commision H2020 research and innovation program under grant agreement RIA 653549.

        The development of Laniakea continues in the framework of [EOSC-Pillar](https://www.eosc-pillar.eu/) (Grant agreement ID: 857650) and [EOSC-Life](https://www.eosc-life.eu/) (Grant agreement ID: 824087) H2020 projects.

        The [Laniakea@ReCaS](https://laniakea-elixir-it.github.io/laniakea_at_recas) service is provided with the support of [ELIXIR-ITALY](https://elixir-italy.org/) and [ReCaS-Bari](https://www.recas-bari.it).
    ifb:
      name: "ELIXIR-FR/IFB"
      url: /ifb/
      #email:
      twitter_username: IFB_Bioinfo
      github_username: ifb-elixirfr
      private_news: true
      url: "https://www.france-bioinformatique.fr/"
      galaxy_server: "https://usegalaxy.fr/"
      blurb: |
        Welcome to the Galaxy Instance of IFB - [usegalaxy.fr](https://usegalaxy.fr/) - Hosted by the [IFB Core Cluster](https://www.france-bioinformatique.fr/cluster-ifb-core/)

header_links:
    main:
        - name: News
          url: /news
        - name: Events
          url: /events
        - name: People
          url: /people
        - name: Citations
          url: /citations
        - name: Tools
          url: /tools
        - name: About
          url: /about
    freiburg:
        - name: News
          url: /freiburg/news
        - name: Events
          url: /freiburg/events
        - name: People
          url: /freiburg/people
        - name: Projects
          url: /freiburg/projects
        - name: Services
          url: /freiburg/services
        - name: Jobs
          url: /freiburg/jobs
        - name: Publications
          url: /freiburg/publications
    erasmusmc:
        - name: News
          url: /erasmusmc/news
        - name: Events
          url: /erasmusmc/events
        - name: People
          url: /erasmusmc/people
        - name: Publications
          url: /erasmusmc/publications
    belgium:
        - name: News
          url: /belgium/news
        - name: Events
          url: /belgium/events
        - name: People
          url: /belgium/people
        - name: Publications
          url: /belgium/publications
    pasteur:
        - name: News
          url: /pasteur/news
        - name: Events
          url: /pasteur/events
        - name: People
          url: /pasteur/people
        - name: Publications
          url: /pasteur/publications
    elixir-it:
        - name: News
          url: /elixir-it/news
        - name: Events
          url: /elixir-it/events
        - name: People
          url: /elixir-it/people
        - name: Publications
          url: /elixir-it/publications
    ifb:
        - name: People
          url: /ifb/people

# Exclude from processing.
# The following items will not be processed, by default. Create a custom list
# to override the default setting.
exclude:
   - Gemfile
   - Gemfile.lock
   - node_modules
   - vendor/bundle/
   - vendor/cache/
   - vendor/gems/
   - vendor/ruby/
   - .idea/
#
# This will simultaneously render all collection items as "plain" pages
collections:
  posts:
    permalink: /posts/:year/:month/:day/:title/
  posts_plain:
    permalink: /posts/:year/:month/:day/:title/plain.html
    output: true
  events:
    permalink: /event/:path/
    output: true
  events_ical:
    permalink: /event/:path/event.ics
    output: true
  events_plain:
    permalink: /event/:path/plain.html
    output: true

defaults:
  -
    scope:
      path: "_posts"
    values:
      layout: news
  -
    scope:
      path: "_posts_plain"
    values:
      layout: news-galaxy
  -
    scope:
      path: "_events"
    values:
      layout: event
  -
    scope:
      path: "_events_ical"
    values:
      layout: event-ical
  -
    scope:
      path: "_events_plain"
    values:
      layout: event-galaxy