CAW 1.2.2

Hotfix for missing {} in memory assignements in uppmax-localhost.config #479

CAW 1.2.1

Bugfixes:

• #471
• #472
• #473

Containers update:

• runascat and runconvertallelecounts are now replaced by r-base
• willmclaren/ensembl-vep:release_90.5 is now base for vepgrch37 and vepgrch38
• vep is removed

Other changes:

• remove old strelka_config.ini that is not used anymore

CAW 1.2.0

Fix a release for the manuscript.
Development will continue on the dev branch

CAW 1.1

Fixing version before fully switching to containers:

• Some tools updated
• Reports are now made by default
• ConcatVCF process improved
• Intervals file can now be a bed file
• Singularity possibilities
• Normal sample preprocessing + HaplotypeCaller is also possible now
• TravisCI testing more complete
• Better verbose output
• Fixing some memory requirements
• Bugs corrected
• Code improvements

CAW 1.0

Stable version including:

• A core sets of Variant Callers
• The possibilities to start analysis from scratch or with realigned and recalibrated BAM files (so that it can only run VC is needed)
• Bugs corrected
• Enhancements for using on UPPMAX clusters
• Docker possibilities

Beta

v0.9

Merge branch 'MaxUlysse-master'

Alpha

This is a relatively stable release used for the first round of DREAM challenge data