From 64fc26cd64eb830984a51ac1933202cbf883c6dc Mon Sep 17 00:00:00 2001 From: kedhammar Date: Mon, 20 May 2024 16:21:42 +0200 Subject: [PATCH] Fix erroneous name of pod5 output dir for ONT runs --- VERSIONLOG.md | 4 ++++ taca/nanopore/ONT_run_classes.py | 2 +- 2 files changed, 5 insertions(+), 1 deletion(-) diff --git a/VERSIONLOG.md b/VERSIONLOG.md index 4658510c..91a1f350 100644 --- a/VERSIONLOG.md +++ b/VERSIONLOG.md @@ -1,5 +1,9 @@ # TACA Version Log +## 20240520.1 + +Fix erroneous name of pod5 output dir for ONT runs. + ## 20240507.1 Broaden ONT transfer script's categorization of QC runs to either experiment dir or sample dir starting with "QC\_". diff --git a/taca/nanopore/ONT_run_classes.py b/taca/nanopore/ONT_run_classes.py index 8529a911..7f03b8f9 100644 --- a/taca/nanopore/ONT_run_classes.py +++ b/taca/nanopore/ONT_run_classes.py @@ -501,7 +501,7 @@ def has_fastq_output(self) -> bool: def has_raw_seq_output(self) -> bool: """Check whether run has sequencing data output.""" - raw_seq_dirs = ["pod5_pass", "fast5_pass"] + raw_seq_dirs = ["pod5", "fast5_pass"] for dir in raw_seq_dirs: if os.path.exists(os.path.join(self.run_abspath, dir)):