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illumina_indexes.yaml
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illumina_indexes.yaml
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##yaml file describing indexes for each lib prepr
##libprepr:
## index_name: index_seq
## DOES NOT INCLUDE:
# TruSight RNA Pan-Cancer Panel
TruSight_Amplicon_Panels:
i7_Index1:
A701: ATCACGAC
A702: ACAGTGGT
A703: CAGATCCA
A704: ACAAACGG
A705: ACCCAGCA
A706: AACCCCTC
A707: CCCAACCT
A708: CACCACAC
A709: GAAACCCA
A710: TGTGACCA
A711: AGGGTCAA
A712: AGGAGTGG
i5_Index2:
A501: TGAACCTT
A502: TGCTAAGT
A503: TGTTCTCT
A504: TAAGACAC
A505: CTAATCGA
A506: CTAGAACA
A507: TAAGTTCC
A508: TAGACCTA
TruSight_Cardio:
i7_Index1:
N701: TAAGGCGA
N702: CGTACTAG
N703: AGGCAGAA
N704: TCCTGAGC
N705: GGACTCCT
N706: TAGGCATG
N707: CTCTCTAC
N708: CAGAGAGG
N709: GCTACGCT
N710: CGAGGCTG
N711: AAGAGGCA
N712: GTAGAGGA
i5_Index2:
E505: GTAAGGAG
TruSight_One:
i7_Index1:
N701: TAAGGCGA
N702: CGTACTAG
N703: AGGCAGAA
N704: TCCTGAGC
N705: GGACTCCT
N706: TAGGCATG
N707: CTCTCTAC
N708: CAGAGAGG
N709: GCTACGCT
N710: CGAGGCTG
N711: AAGAGGCA
N712: GTAGAGGA
i5_Index2:
E502: CTCTCTAT
E503: TATCCTCT
E504: AGAGTAGA
E505: GTAAGGAG
TruSight_Rapid_Capture:
i7_Index1:
N701: TAAGGCGA
N702: CGTACTAG
N703: AGGCAGAA
N704: TCCTGAGC
N705: GGACTCCT
N706: TAGGCATG
N707: CTCTCTAC
N708: CAGAGAGG
N709: GCTACGCT
N710: CGAGGCTG
N711: AAGAGGCA
N712: GTAGAGGA
i5_Index2:
E502: CTCTCTAT
E505: GTAAGGAG
E506: ACTGCATA
E517: GCGTAAGA
TruSight_Tumor_15:
i7_Index1:
R701: ATCACG
R702: CGATGT
R703: TTAGGC
R704: TGACCA
R705: ACAGTG
R706: GCCAAT
R707: CAGATC
R708: ACTTGA
R709: GATCAG
R711: GGCTAC
R712: CTTGTA
R725: ACTGAT
R726: ATGAGC
R727: ATTCCT
R728: CAAAAG
R729: CAACTA
R730: CACCGG
R731: CACGAT
R732: CACTCA
R733: CAGGCG
R734: CATGGC
R735: CATTTT
R736: CCAACA
R749: GATGCT
i5_Index2:
A501: TGAACCTT
A502: TGCTAAGT
Illumina_Nextera_v1:
i7_Index1:
N701: TAAGGCGA
N702: CGTACTAG
N703: AGGCAGAA
N704: TCCTGAGC
N705: GGACTCCT
N706: TAGGCATG
N707: CTCTCTAC
N708: CAGAGAGG
N709: GCTACGCT
N710: CGAGGCTG
N711: AAGAGGCA
N712: GTAGAGGA
i5_Index2:
NSE501501: TAGATCGC
NSE501502: CTCTCTAT
NSE501503: TATCCTCT
NSE501504: AGAGTAGA
NSE501505: GTAAGGAG
NSE501506: ACTGCATA
NSE501507: AAGGAGTA
NSE501508: CTAAGCCT
NSE501517: GCGTAAGA
Illumina_Nextera_v2:
i7_Index1:
N701: TAAGGCGA
N702: CGTACTAG
N703: AGGCAGAA
N704: TCCTGAGC
N705: GGACTCCT
N706: TAGGCATG
N707: CTCTCTAC
N710: CGAGGCTG
N711: AAGAGGCA
N712: GTAGAGGA
N714: GCTCATGA
N715: ATCTCAGG
N716: ACTCGCTA
N718: GGAGCTAC
N719: GCGTAGTA
N720: CGGAGCCT
N721: TACGCTGC
N722: ATGCGCAG
N723: TAGCGCTC
N724: ACTGAGCG
N726: CCTAAGAC
N727: CGATCAGT
N728: TGCAGCTA
N729: TCGACGTC
i5_Index2:
S502: CTCTCTAT
S503: TATCCTCT
S505: GTAAGGAG
S506: ACTGCATA
S507: AAGGAGTA
S508: CTAAGCCT
S510: CGTCTAAT
S511: TCTCTCCG
S513: TCGACTAG
S515: TTCTAGCT
S516: CCTAGAGT
S517: GCGTAAGA
S518: CTATTAAG
S520: AAGGCTAT
S521: GAGCCTTA
S522: TTATGCGA
TruSeq_Amplicon:
i7_Index1:
A701: ATCACGAC
A702: ACAGTGGT
A703: CAGATCCA
A704: ACAAACGG
A705: ACCCAGCA
A706: AACCCCTC
A707: CCCAACCT
A708: CACCACAC
A709: GAAACCCA
A710: TGTGACCA
A711: AGGGTCAA
A712: AGGAGTGG
i5_Index2:
A501: TGAACCTT
A502: TGCTAAGT
A503: TGTTCTCT
A504: TAAGACAC
A505: CTAATCGA
A506: CTAGAACA
A507: TAAGTTCC
A508: TAGACCTA
TruSeq_DNA_Methylation:
i7_Index1:
Index1: ATCACG
Index2: CGATGT
Index3: TTAGGC
Index4: TGACCA
Index5: ACAGTG
Index6: GCCAAT
Index7: CAGATC
Index8: ACTTGA
Index9: GATCAG
Index10: TAGCTT
Index11: GGCTAC
Index12: CTTGTA
TruSeq_HT_Kits:
i7_Index1:
D701: ATTACTCG
D702: TCCGGAGA
D703: CGCTCATT
D704: GAGATTCC
D705: ATTCAGAA
D706: GAATTCGT
D707: CTGAAGCT
D708: TAATGCGC
D709: CGGCTATG
D710: TCCGCGAA
D711: TCTCGCGC
D712: AGCGATAG
i5_Index2:
D501: TATAGCCT
D502: ATAGAGGC
D503: CCTATCCT
D504: GGCTCTGA
D505: AGGCGAAG
D506: TAATCTTA
D507: CAGGACGT
D508: GTACTGAC
TruSeq_LT_Kits_and_TruSeq_v1_v2:
i7_Index1:
Index1: ATCACG
Index2: CGATGT
Index3: TTAGGC
Index4: TGACCA
Index5: ACAGTG
Index6: GCCAAT
Index7: CAGATC
Index8: ACTTGA
Index9: GATCAG
Index10: TAGCTT
Index11: GGCTAC
Index12: CTTGTA
Index13: AGTCAA
Index14: AGTTCC
Index15: ATGTCA
Index16: CCGTCC
Index18: GTCCGC
Index19: GTGAAA
Index20: GTGGCC
Index21: GTTTCG
Index22: CGTACG
Index23: GAGTGG
Index25: ACTGAT
Index27: ATTCCT
TruSeq_Ribo_Profile:
i7_Index1:
A001: ATCACG
A002: CGATGT
A003: TTAGGC
A004: TGACCA
A005: ACAGTG
A006: GCCAAT
A007: CAGATC
A008: ACTTGA
A009: GATCAG
A010: TAGCTT
A011: GGCTAC
A012: CTTGTA
TruSeq_Small_RNA:
i7_Index1:
RPI1: CGTGAT
RPI2: ACATCG
RPI3: GCCTAA
RPI4: TGGTCA
RPI5: CACTGT
RPI6: ATTGGC
RPI7: GATCTG
RPI8: TCAAGT
RPI9: CTGATC
RPI10: AAGCTA
RPI11: GTAGCC
RPI12: TACAAG
RPI13: TTGACT
RPI14: GGAACT
RPI15: TGACAT
RPI16: GGACGG
RPI17: CTCTAC
RPI18: GCGGAC
RPI19: TTTCAC
RPI20: GGCCAC
RPI21: CGAAAC
RPI22: CGTACG
RPI23: CCACTC
RPI24: GCTACC
RPI25: ATCAGT
RPI26: GCTCAT
RPI27: AGGAAT
RPI28: CTTTTG
RPI29: TAGTTG
RPI30: CCGGTG
RPI31: ATCGTG
RPI32: TGAGTG
RPI33: CGCCTG
RPI34: GCCATG
RPI35: AAAATG
RPI36: TGTTGG
RPI37: ATTCCG
RPI38: AGCTAG
RPI39: GTATAG
RPI40: TCTGAG
RPI41: GTCGTC
RPI42: CGATTA
RPI43: GCTGTA
RPI44: ATTATA
RPI45: GAATGA
RPI46: TCGGGA
RPI47: CTTCGA
TruSeq_Targeted_RNA_Expression:
i7_Index1:
R701: ATCACG
R702: CGATGT
R703: TTAGGC
R704: TGACCA
R705: ACAGTG
R706: GCCAAT
R707: CAGATC
R708: ACTTGA
R709: GATCAG
R710: TAGCTT
R711: GGCTAC
R712: CTTGTA
R713: AGTCAA
R714: AGTTCC
R715: ATGTCA
R716: CCGTCC
R717: GTAGAG
R718: GTCCGC
R719: GTGAAA
R720: GTGGCC
R721: GTTTCG
R722: CGTACG
R723: GAGTGG
R724: GGTAGC
R725: ACTGAT
R726: ATGAGC
R727: ATTCCT
R728: CAAAAG
R729: CAACTA
R730: CACCGG
R731: CACGAT
R732: CACTCA
R733: CAGGCG
R734: CATGGC
R735: CATTTT
R736: CCAACA
R737: CGGAAT
R738: CTAGCT
R739: CTATAC
R740: CTCAGA
R741: GACGAC
R742: TAATCG
R743: TACAGC
R744: TATAAT
R745: TCATTC
R746: TCCCGA
R747: TCGAAG
R748: TCGGCA
i5_Index2:
A501: TGAACCTT
A502: TGCTAAGT
A503: TGTTCTCT
A504: TAAGACAC
A505: CTAATCGA
A506: CTAGAACA
A507: TAAGTTCC
A508: TAGACCTA