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Hello, I was trying to use your tool for checking metagenomics fastq.gz files. I am working in HPC, so I created a new environment where I downloaded conda install preprocessing -c Fasnicar. The problem is when I send the command you put parallel -j NCPU 'preprocess.sh -i {} [ other parameters]' ::: ls input_folder
Academic tradition requires you to cite the works on which your paper is based.
If you use programs that use GNU Parallel to process data for an article in a scholarly publication, please cite
scientific publication, please cite:
Tange, O. (2024, Sept. 22). GNU Parallel 20240922 ('Gold Apollo AR924').
Zenodo. https://doi.org/10.5281/zenodo.13826092
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If you pay 10000 euros you should feel free to use GNU Parallel without citations.
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Come on: You have run Parallel 10 times. Isn't it time
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/usr/bin/bash: preprocess.sh: command not found
and even if I go into the preprocess folder, where I see the file, I get the same error.
but again, it doesn't work. I can't figure out how to make the command go.
I apologize if this is a silly question or if I didn't explain myself well but there are really few explanations
Michela
The text was updated successfully, but these errors were encountered:
Hello, I was trying to use your tool for checking metagenomics fastq.gz files. I am working in HPC, so I created a new environment where I downloaded conda install preprocessing -c Fasnicar. The problem is when I send the command you put parallel -j NCPU 'preprocess.sh -i {} [ other parameters]' :::
ls input_folder
and even if I go into the preprocess folder, where I see the file, I get the same error.
I created a sh job I :
but again, it doesn't work. I can't figure out how to make the command go.
I apologize if this is a silly question or if I didn't explain myself well but there are really few explanations
Michela
The text was updated successfully, but these errors were encountered: