HierarchyMix is a software that can be used to reconstruct the 4-way admixture history considering the complex admixture structure. It could automatically select the optimal admixture model between the hierarchical admixture model and the sequential admixture model. HierarchyMix is an extension of the MultiWaver series software.
The usages of HierarchyMix can be found in HierarchyMix_manual.pdf
If you use HierarchyMix in your research, please cite the following paper:
Shi Zhang, Rui Zhang, Kai Yuan, Lu Yang, Chang Liu, Yuting Liu, Xumin Ni, and Shuhua Xu. Reconstructing complex admixture history using a hierarchical model. Briefings in Bioinformatics. 2024, 25(2): 1-10. doi: https://doi.org/10.1093/bib/bbad540.