update_mlst.yml

##### ------------------------------------------------------------------------------------------------ #####
##### This caller workflow tests, builds, and pushes the image to Docker Hub and Quay using the most   #####
##### recent version of MLST and downloads the current MLST schemes.                                   #####
##### It takes no manual input.                                                                        #####
##### ------------------------------------------------------------------------------------------------ #####

name: Update MLST

on: 
  workflow_dispatch:
  schedule:
    - cron: '30 7 1 * *'

run-name: Updating MLST

jobs:
  update:
    runs-on: ubuntu-latest
    steps:
          
      - name: pull repo
        uses: actions/checkout@v4

      - name: set mlst version
        id: latest_version
        run: |
          version=2.23.0
          echo "version=$version" >> $GITHUB_OUTPUT 
          
          file=mlst/2.23.0-2024-03/Dockerfile
          ls $file
          echo "file=$file" >> $GITHUB_OUTPUT

      - name: set up docker buildx
        id: buildx
        uses: docker/setup-buildx-action@v3

      - name: build to test
        id: docker_build_to_test
        uses: docker/build-push-action@v5
        with:
          context: mlst/${{ steps.latest_version.outputs.version }}
          target: test
          load: true
          push: false
          tags: mlst:update

      - name: Get current date
        id: date
        run: |
          date=$(date '+%Y-%m-%d')
          echo "the date is $date"
          echo "date=$date" >> $GITHUB_OUTPUT
      
      - name: Login to DockerHub
        uses: docker/login-action@v3
        with:
          username: ${{ secrets.DOCKER_HUB_USERNAME }}
          password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}

      - name: Login to Quay
        uses: docker/login-action@v3
        with:
          registry: quay.io
          username: ${{ secrets.QUAY_USERNAME }}
          password: ${{ secrets.QUAY_ROBOT_TOKEN }}

      - name: Build and push user-defined tag to DockerHub
        id: docker_build_user_defined_tag
        uses: docker/build-push-action@v5
        with:
          file: ${{ steps.latest_version.outputs.file }}
          target: app
          push: true
          tags: staphb/mlst:${{ steps.latest_version.outputs.version }}-${{ steps.date.outputs.date }}
            
      - name: Build and push to Quay
        id: build
        uses: docker/build-push-action@v5
        with:
          file: ${{ steps.latest_version.outputs.file }}
          target: app
          push: true
          tags: quay.io/staphb/mlst:${{ steps.latest_version.outputs.version }}-${{ steps.date.outputs.date }}

      - name: Image digest
        run: echo ${{ steps.docker_build.outputs.digest }}