Main tool: pypolca
Code repository:
Additional tools:
- samtools: 1.19
- vcftools: 0.1.16
- bwa: 0.7.17-r1188
- freebayes: 1.3.7
Basic information on how to use this tool:
- executable: pypolca
- help: pypolca -h
- version: pypolca -v
- description: Polished long-read assemblies with Illumina reads
pypolca is a Standalone Python re-implementation of the POLCA polisher from the MaSuRCA genome assembly and analysis toolkit.
Full documentation: https://github.com/rrwick/Polypolish
pypolca run -a assembly.fasta -1 R1.fastq.gz -2 R2.fastq.gz -t 4 -o output