Main tool : SeqKit
SeqKit is a cross-platform and ultrafast toolkit for FASTA/Q file manipulation.
Citation:
W Shen, S Le, Y Li*, F Hu*. SeqKit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation. PLOS ONE. doi:10.1371/journal.pone.0163962.
- Documents: http://bioinf.shenwei.me/seqkit (Usage, FAQ, Tutorial, and Benchmark)
# get simple statistics from FASTA/Q files
seqkit stats <file name(s)>
# or with flags
seqkit stats --all --tabular <file name(s)>
# conversion from FASTA to FASTQ
seqkit fa2fq <file name(s)>