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Verkko container

Main tool: verkko

Code repository: https://github.com/marbl/verkko

Basic information on how to use this tool:

  • executable: verkko
  • help: --help
  • version: --version
  • description: Verkko is a hybrid genome assembly pipeline developed for telomere-to-telomere assembly of PacBio HiFi or Oxford Nanopore Duplex and Oxford Nanopore simplex reads.

Full documentation: https://github.com/marbl/verkko

Example Usage

verkko -d <work-directory> --hifi <hifi-read-files> [--nano <ont-read-files>]