From 4029e26a7c2d0dfa54eccd84a294d52dce172f9c Mon Sep 17 00:00:00 2001
From: Jake Beal <jake.beal@raytheon.com>
Date: Sun, 26 Mar 2023 16:32:07 -0500
Subject: [PATCH] Patch issue #200: Fuzzy locations were creating invalid SBOL
 documents be 1) add a non-standard sbol#locationPosition type, and 2)
 reference to an unrecognized Location from a SequenceFeature. Temporarily
 address this by reverting to the prior behavior of truncating fuzzy ranges
 into ranges.

---
 sbol_utilities/sbol3_genbank_conversion.py    | 11 +--
 .../test_location_types.nt                    | 72 +++++++++----------
 test/test_genbank_sbol3_direct.py             |  1 +
 3 files changed, 36 insertions(+), 48 deletions(-)

diff --git a/sbol_utilities/sbol3_genbank_conversion.py b/sbol_utilities/sbol3_genbank_conversion.py
index 1287ae41..2f726240 100644
--- a/sbol_utilities/sbol3_genbank_conversion.py
+++ b/sbol_utilities/sbol3_genbank_conversion.py
@@ -195,13 +195,7 @@ class Location_GenBank_Extension(sbol3.Location):
         start and end position types (AfterPostion / BeforePosition / ExactPosition).
         :extends: sbol3.Location class
         """
-        # Use the SBOL3 namespace for the type URI as a workaround for
-        # a bug in pySBOL3.
-        # TODO: use genbank namespace when the pySBOL3 bug is fixed
-        # NOTE: pySBOL3 BUG REPORT: https://github.com/SynBioDex/pySBOL3/issues/414
-        # NOTE: pySBOL3 BUG FIX   : https://github.com/SynBioDex/pySBOL3/pull/415
-        # GENBANK_RANGE_NS = "http://www.ncbi.nlm.nih.gov/genbank#locationPosition"
-        GENBANK_RANGE_NS = sbol3.SBOL3_NS + "locationPosition"
+        GENBANK_RANGE_NS = "http://www.ncbi.nlm.nih.gov/genbank#locationPosition"
 
         def __init__(self, sequence: sbol3.Sequence = sbol3.Sequence("autoCreatedSequence"),
                      *, identity: str = None, type_uri: str = GENBANK_RANGE_NS,
@@ -734,7 +728,8 @@ def _handle_features_gb_to_sbol(self, record: SeqRecord,
                     start_position = self.SBOL_LOCATION_POSITION[type(gb_loc.start)]
                     # If both start and end positions are exact positions, the
                     # feature location can be created simply as a range object
-                    if start_position == 1 and end_position == 1:
+                    # Kludge truncation of fuzzy ranges (https://github.com/SynBioDex/SBOL-utilities/issues/200)
+                    if start_position == 1 and end_position == 1 or True:
                         locs = sbol3.Range(
                             sequence    = seq,
                             orientation = feat_loc_orientation,
diff --git a/test/test_files/sbol3_genbank_conversion/test_location_types.nt b/test/test_files/sbol3_genbank_conversion/test_location_types.nt
index 14c4f585..67132b46 100644
--- a/test/test_files/sbol3_genbank_conversion/test_location_types.nt
+++ b/test/test_files/sbol3_genbank_conversion/test_location_types.nt
@@ -36,14 +36,12 @@
 <https://test.sbol3.genbank/JWYZ01000115/Reference_1> <http://www.ncbi.nlm.nih.gov/genbank#reference#title> "Direct Submission" .
 <https://test.sbol3.genbank/JWYZ01000115/Reference_1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#TopLevel> .
 <https://test.sbol3.genbank/JWYZ01000115/Reference_1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.ncbi.nlm.nih.gov/genbank#reference> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1/locationPosition1> <http://sbols.org/v3#displayId> "locationPosition1" .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1/locationPosition1> <http://sbols.org/v3#hasSequence> <https://test.sbol3.genbank/JWYZ01000115_sequence> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1/locationPosition1> <http://sbols.org/v3#locationPosition#end> "115"^^<http://www.w3.org/2001/XMLSchema#integer> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1/locationPosition1> <http://sbols.org/v3#locationPosition#end_position> "1"^^<http://www.w3.org/2001/XMLSchema#integer> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1/locationPosition1> <http://sbols.org/v3#locationPosition#start> "1"^^<http://www.w3.org/2001/XMLSchema#integer> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1/locationPosition1> <http://sbols.org/v3#locationPosition#start_position> "0"^^<http://www.w3.org/2001/XMLSchema#integer> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1/locationPosition1> <http://sbols.org/v3#orientation> <https://identifiers.org/SO:0001031> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1/locationPosition1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#locationPosition> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1/Range1> <http://sbols.org/v3#displayId> "Range1" .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1/Range1> <http://sbols.org/v3#hasSequence> <https://test.sbol3.genbank/JWYZ01000115_sequence> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1/Range1> <http://sbols.org/v3#end> "115"^^<http://www.w3.org/2001/XMLSchema#integer> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1/Range1> <http://sbols.org/v3#start> "1"^^<http://www.w3.org/2001/XMLSchema#integer> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1/Range1> <http://sbols.org/v3#orientation> <https://identifiers.org/SO:0001031> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1/Range1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Range> .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature10/Range1> <http://sbols.org/v3#displayId> "Range1" .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature10/Range1> <http://sbols.org/v3#end> "2299"^^<http://www.w3.org/2001/XMLSchema#integer> .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature10/Range1> <http://sbols.org/v3#hasSequence> <https://test.sbol3.genbank/JWYZ01000115_sequence> .
@@ -128,32 +126,28 @@
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature13> <http://www.ncbi.nlm.nih.gov/genbank#featureQualifier#value> "6:KIG36583.1" .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature13> <http://www.ncbi.nlm.nih.gov/genbank#featureQualifier#value> "7:MIIGNIHNLQPWLPQELRQAIEHIKAHVTAETPKGKHDIEGNHLFYLISEDMTEPYEARRAEYHARYLDIQIVLKGQEGMTFSTQPAGTPDTDWLADKDIAFLPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKMLMA" .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature13> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#SequenceFeature> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14/locationPosition1> <http://sbols.org/v3#displayId> "locationPosition1" .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14/locationPosition1> <http://sbols.org/v3#hasSequence> <https://test.sbol3.genbank/JWYZ01000115_sequence> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14/locationPosition1> <http://sbols.org/v3#locationPosition#end> "3242"^^<http://www.w3.org/2001/XMLSchema#integer> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14/locationPosition1> <http://sbols.org/v3#locationPosition#end_position> "2"^^<http://www.w3.org/2001/XMLSchema#integer> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14/locationPosition1> <http://sbols.org/v3#locationPosition#start> "3019"^^<http://www.w3.org/2001/XMLSchema#integer> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14/locationPosition1> <http://sbols.org/v3#locationPosition#start_position> "1"^^<http://www.w3.org/2001/XMLSchema#integer> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14/locationPosition1> <http://sbols.org/v3#orientation> <https://identifiers.org/SO:0001030> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14/locationPosition1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#locationPosition> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14/Range1> <http://sbols.org/v3#displayId> "Range1" .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14/Range1> <http://sbols.org/v3#hasSequence> <https://test.sbol3.genbank/JWYZ01000115_sequence> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14/Range1> <http://sbols.org/v3#end> "3242"^^<http://www.w3.org/2001/XMLSchema#integer> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14/Range1> <http://sbols.org/v3#start> "3019"^^<http://www.w3.org/2001/XMLSchema#integer> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14/Range1> <http://sbols.org/v3#orientation> <https://identifiers.org/SO:0001030> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14/Range1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Range> .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14> <http://sbols.org/v3#displayId> "SequenceFeature14" .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14> <http://sbols.org/v3#hasLocation> <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14/locationPosition1> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14> <http://sbols.org/v3#hasLocation> <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14/Range1> .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14> <http://sbols.org/v3#name> "_converted_feature_13" .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14> <http://sbols.org/v3#orientation> <https://identifiers.org/SO:0001030> .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14> <http://sbols.org/v3#role> <https://identifiers.org/SO:0000704> .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14> <http://www.ncbi.nlm.nih.gov/genbank#featureQualifier#key> "0:locus_tag" .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14> <http://www.ncbi.nlm.nih.gov/genbank#featureQualifier#value> "0:PU64_23690" .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#SequenceFeature> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15/locationPosition1> <http://sbols.org/v3#displayId> "locationPosition1" .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15/locationPosition1> <http://sbols.org/v3#hasSequence> <https://test.sbol3.genbank/JWYZ01000115_sequence> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15/locationPosition1> <http://sbols.org/v3#locationPosition#end> "3242"^^<http://www.w3.org/2001/XMLSchema#integer> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15/locationPosition1> <http://sbols.org/v3#locationPosition#end_position> "2"^^<http://www.w3.org/2001/XMLSchema#integer> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15/locationPosition1> <http://sbols.org/v3#locationPosition#start> "3019"^^<http://www.w3.org/2001/XMLSchema#integer> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15/locationPosition1> <http://sbols.org/v3#locationPosition#start_position> "1"^^<http://www.w3.org/2001/XMLSchema#integer> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15/locationPosition1> <http://sbols.org/v3#orientation> <https://identifiers.org/SO:0001030> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15/locationPosition1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#locationPosition> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15/Range1> <http://sbols.org/v3#displayId> "Range1" .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15/Range1> <http://sbols.org/v3#hasSequence> <https://test.sbol3.genbank/JWYZ01000115_sequence> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15/Range1> <http://sbols.org/v3#end> "3242"^^<http://www.w3.org/2001/XMLSchema#integer> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15/Range1> <http://sbols.org/v3#start> "3019"^^<http://www.w3.org/2001/XMLSchema#integer> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15/Range1> <http://sbols.org/v3#orientation> <https://identifiers.org/SO:0001030> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15/Range1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Range> .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15> <http://sbols.org/v3#displayId> "SequenceFeature15" .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15> <http://sbols.org/v3#hasLocation> <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15/locationPosition1> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15> <http://sbols.org/v3#hasLocation> <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15/Range1> .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15> <http://sbols.org/v3#name> "_converted_feature_14" .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15> <http://sbols.org/v3#orientation> <https://identifiers.org/SO:0001030> .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15> <http://sbols.org/v3#role> <https://identifiers.org/SO:0000316> .
@@ -175,23 +169,21 @@
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15> <http://www.ncbi.nlm.nih.gov/genbank#featureQualifier#value> "7:MSKISGWNFSQNITSADNCKQKNEDLDTWYVGMNDFARIAGGQNSRSNILSPRAFLEFLAKIFTLGYVDFSKRS" .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#SequenceFeature> .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1> <http://sbols.org/v3#displayId> "SequenceFeature1" .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1> <http://sbols.org/v3#hasLocation> <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1/locationPosition1> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1> <http://sbols.org/v3#hasLocation> <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1/Range1> .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1> <http://sbols.org/v3#name> "_converted_feature_0" .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1> <http://sbols.org/v3#orientation> <https://identifiers.org/SO:0001031> .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1> <http://sbols.org/v3#role> <https://identifiers.org/SO:0000704> .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1> <http://www.ncbi.nlm.nih.gov/genbank#featureQualifier#key> "0:locus_tag" .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1> <http://www.ncbi.nlm.nih.gov/genbank#featureQualifier#value> "0:PU64_23660" .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#SequenceFeature> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2/locationPosition1> <http://sbols.org/v3#displayId> "locationPosition1" .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2/locationPosition1> <http://sbols.org/v3#hasSequence> <https://test.sbol3.genbank/JWYZ01000115_sequence> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2/locationPosition1> <http://sbols.org/v3#locationPosition#end> "115"^^<http://www.w3.org/2001/XMLSchema#integer> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2/locationPosition1> <http://sbols.org/v3#locationPosition#end_position> "1"^^<http://www.w3.org/2001/XMLSchema#integer> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2/locationPosition1> <http://sbols.org/v3#locationPosition#start> "1"^^<http://www.w3.org/2001/XMLSchema#integer> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2/locationPosition1> <http://sbols.org/v3#locationPosition#start_position> "0"^^<http://www.w3.org/2001/XMLSchema#integer> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2/locationPosition1> <http://sbols.org/v3#orientation> <https://identifiers.org/SO:0001031> .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2/locationPosition1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#locationPosition> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2/Range1> <http://sbols.org/v3#displayId> "Range1" .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2/Range1> <http://sbols.org/v3#hasSequence> <https://test.sbol3.genbank/JWYZ01000115_sequence> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2/Range1> <http://sbols.org/v3#end> "115"^^<http://www.w3.org/2001/XMLSchema#integer> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2/Range1> <http://sbols.org/v3#start> "1"^^<http://www.w3.org/2001/XMLSchema#integer> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2/Range1> <http://sbols.org/v3#orientation> <https://identifiers.org/SO:0001031> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2/Range1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Range> .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2> <http://sbols.org/v3#displayId> "SequenceFeature2" .
-<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2> <http://sbols.org/v3#hasLocation> <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2/locationPosition1> .
+<https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2> <http://sbols.org/v3#hasLocation> <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2/Range1> .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2> <http://sbols.org/v3#name> "_converted_feature_1" .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2> <http://sbols.org/v3#orientation> <https://identifiers.org/SO:0001031> .
 <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2> <http://sbols.org/v3#role> <https://identifiers.org/SO:0000316> .
@@ -437,10 +429,10 @@
 <https://test.sbol3.genbank/JWYZ01000115> <http://www.ncbi.nlm.nih.gov/genbank#date> "16-JAN-2015" .
 <https://test.sbol3.genbank/JWYZ01000115> <http://www.ncbi.nlm.nih.gov/genbank#dbxrefs> "BioProject:PRJNA266657::BioSample:SAMN03177677" .
 <https://test.sbol3.genbank/JWYZ01000115> <http://www.ncbi.nlm.nih.gov/genbank#division> "BCT" .
-<https://test.sbol3.genbank/JWYZ01000115> <http://www.ncbi.nlm.nih.gov/genbank#fuzzyFeatures> <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14> .
-<https://test.sbol3.genbank/JWYZ01000115> <http://www.ncbi.nlm.nih.gov/genbank#fuzzyFeatures> <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15> .
-<https://test.sbol3.genbank/JWYZ01000115> <http://www.ncbi.nlm.nih.gov/genbank#fuzzyFeatures> <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1> .
-<https://test.sbol3.genbank/JWYZ01000115> <http://www.ncbi.nlm.nih.gov/genbank#fuzzyFeatures> <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2> .
+<https://test.sbol3.genbank/JWYZ01000115> <http://sbols.org/v3#hasFeature> <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature14> .
+<https://test.sbol3.genbank/JWYZ01000115> <http://sbols.org/v3#hasFeature> <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature15> .
+<https://test.sbol3.genbank/JWYZ01000115> <http://sbols.org/v3#hasFeature> <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature1> .
+<https://test.sbol3.genbank/JWYZ01000115> <http://sbols.org/v3#hasFeature> <https://test.sbol3.genbank/JWYZ01000115/SequenceFeature2> .
 <https://test.sbol3.genbank/JWYZ01000115> <http://www.ncbi.nlm.nih.gov/genbank#id> "JWYZ01000115.1" .
 <https://test.sbol3.genbank/JWYZ01000115> <http://www.ncbi.nlm.nih.gov/genbank#keywords> "WGS" .
 <https://test.sbol3.genbank/JWYZ01000115> <http://www.ncbi.nlm.nih.gov/genbank#locus> "JWYZ01000115" .
diff --git a/test/test_genbank_sbol3_direct.py b/test/test_genbank_sbol3_direct.py
index e06f0cc6..7cd60530 100644
--- a/test/test_genbank_sbol3_direct.py
+++ b/test/test_genbank_sbol3_direct.py
@@ -266,6 +266,7 @@ def test_feature_location_types_ignore_fuzzy(self):
         sbol3.set_namespace(self.converter.TEST_NAMESPACE)
         self._test_genbank_to_sbol3(sample_sbol3_file=sbol3_file, sample_genbank_file=genbank_file)
 
+    @unittest.skip(reason="Round-tripping blocked by https://github.com/SynBioDex/SBOL-utilities/issues/200")
     def test_feature_location_types_round_trip_fuzzy(self):
         """Test ability to correctly round trip genbank test files in the iGEM distribution which have
         different FeatureLocation types like BeforePosition / AfterPosition / ExactPosition.