Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Structure Assembly #363

Open
JMante1 opened this issue Dec 22, 2021 · 2 comments
Open

Structure Assembly #363

JMante1 opened this issue Dec 22, 2021 · 2 comments
Assignees
@tcmitchell
Labels
question Further information is requested

Comments

@JMante1
Copy link

JMante1 commented Dec 22, 2021

sbol2 had: compdef.assemblePrimaryStructure([comp1, comp2, comp3]) and then a compile method to generate the sequence of the composite part. What is the equivalent in SBOL? I am currently making composite parts by creating a component and then adding a series of subcomponents as features to the object but that doesn't give a sequence?
@JMante1 JMante1 added the question Further information is requested label Dec 22, 2021
@jakebeal
Copy link
Contributor

With SBOL3, this sort of functionality has been moved out of the core library and into SBOL-utilities.
For the specific case of computing sequences in python, you will want the sbol_utilities.calculate_sequences package, which has functions for calculating the sequence of a particular component or of all components in a document.

@tcmitchell
Copy link
Collaborator

It's been about a month with no activity on this issue. Has the question been answered? Is there any additional information needed?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@tcmitchell tcmitchell

Labels
question Further information is requested
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
3 participants
@tcmitchell @jakebeal @JMante1