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sboljs3 is a library for the Synthetic Biology Open Language (SBOL) written in TypeScript, for JavaScript/TypeScript applications in the browser or node.js.

sboljs3 is built on rdfoo, a library for creating object oriented RDF abstractions in TypeScript. It can therefore be used in conjunction with other rdfoo abstractions. For example, the PROV-O abstraction used by sboljs3 is provided by rdfoo-prov.

Implemented so far

  • Reading and writing SBOL1, SBOL2, and SBOL3
  • Converting between SBOL1, SBOL2, and SBOL3
  • Reading (converting) FASTA and GenBank

Not implemented so far

  • Writing FASTA and GenBank
  • Validation

Citation

If you use this library in your work, please cite

@article{sboljs,
  author = {McLaughlin, James Alastair and Myers, Chris J. and Zundel, Zach and Wilkinson, Nathan and Atallah, Christian and Wipat, Anil},
  title = {sboljs: Bringing the Synthetic Biology Open Language to the Web Browser},
  journal = {ACS Synthetic Biology},
  volume = {8},
  number = {1},
  pages = {191-193},
  year = {2019},
  doi = {10.1021/acssynbio.8b00338},
  URL = { https://doi.org/10.1021/acssynbio.8b00338 },
  eprint = {  https://doi.org/10.1021/acssynbio.8b00338 }
}