From a426e4a4e8787e9abd112068abe62ec9922befe7 Mon Sep 17 00:00:00 2001
From: Olivier Labayle <olabayle@gmail.com>
Date: Tue, 30 Jan 2024 10:19:42 +0000
Subject: [PATCH] remove deprecated option

---
 bin/generate_tl_inputs.jl | 4 ----
 1 file changed, 4 deletions(-)

diff --git a/bin/generate_tl_inputs.jl b/bin/generate_tl_inputs.jl
index e85c9ff..304c594 100644
--- a/bin/generate_tl_inputs.jl
+++ b/bin/generate_tl_inputs.jl
@@ -134,10 +134,6 @@ function parse_commandline()
         "results"
             help = "CSV file containing TarGene results."
             required = true
-        "--outdir"
-            help = "Where the data will be generated."
-            arg_type = String
-            default = pwd()
         "--pval-threshold"
             help = "The p-value threshold for significant results calling"
             default = 0.05