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Upon running the targene-pipeline (v0.11.0) using a single variant and single trait, the final step GenerateOutputs() fails. Upon further inspection, this only occurs when the number of non-NA P-values per-estimator is 1. This would occur when you are running TarGene with only a single variant and single trait (currently experiencing this when reproducing FTO variant on BMI results on the AoU cohort).
Suggested changes:
Make QQplot generation optional when only a single p-value (per-estimator) is present.
Update targene-pipeline to make this output QQplot.png optional.
The text was updated successfully, but these errors were encountered:
Upon running the targene-pipeline (v0.11.0) using a single variant and single trait, the final step GenerateOutputs() fails. Upon further inspection, this only occurs when the number of non-NA P-values per-estimator is 1. This would occur when you are running TarGene with only a single variant and single trait (currently experiencing this when reproducing FTO variant on BMI results on the AoU cohort).
Suggested changes:
The text was updated successfully, but these errors were encountered: