From 61645db3b6559e9407c913707e58f70650842b62 Mon Sep 17 00:00:00 2001 From: Pablo Riesgo Ferreiro Date: Fri, 10 Jun 2022 09:43:34 +0200 Subject: [PATCH] fix command line conflicting argument --- vafator/__init__.py | 2 +- vafator/command_line.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/vafator/__init__.py b/vafator/__init__.py index b2400ec..2f19ce5 100755 --- a/vafator/__init__.py +++ b/vafator/__init__.py @@ -1 +1 @@ -VERSION='1.3.0' \ No newline at end of file +VERSION='1.3.1' \ No newline at end of file diff --git a/vafator/command_line.py b/vafator/command_line.py index 0f26ddf..b3c3825 100755 --- a/vafator/command_line.py +++ b/vafator/command_line.py @@ -115,7 +115,7 @@ def vafator2decifer(): help="BED file of genomic regions to exclude") parser.add_argument("-p", "--min_purity", required=False, default=0.0, type=float, help="minimum purity to consider samples") - parser.add_argument("-S", "--snp_file", required=False, default=None, type=str, + parser.add_argument("--snp_file", required=False, default=None, type=str, help="HATCHet file containing germline SNP counts in tumor samples, baf/tumor.1bed") args = parser.parse_args() run_vafator2decifer(args)