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Changelog

All notable changes to this project will be documented in this file. Dates are displayed in UTC.

Generated by auto-changelog.

17 March 2022

  • add eLabFTW + small fixes #814
  • fixing tests and updating @teselagen/bio-parsers c38bb83
  • a bunch more work on improving primer base editing 0efe5e4
  • improve restriction enzyme search when hidden enzymes are matched; improve single enzyme info dialog; fix tests; 5eb5641

28 January 2022

  • removing axios as a dep; updating action ymls 5d03c1e
  • fixing tests fc437bf
  • updating github action d5113e7

7 January 2022

  • adding a molecule type field to the status bar #805 ba519d1

23 December 2021

23 December 2021

23 December 2021

23 December 2021

23 December 2021

  • using withStore from TRC 52d3c7b
  • trying out bumping parallelism d734d4f

21 December 2021

20 December 2021

  • Create CODE_OF_CONDUCT.md #796
  • CLN-35253: add extra length on non en letters. (#14) #795
  • improving demo link clicking to close sidebar c6a93f0
  • publishing new patch 1243a78
  • updating 6825933

4 January 2022

  • fixing cutsite rendering and allowing annotation properties table rows to be dbl clicked to edit - #803 and #804 d3e82ac
  • reverting mac-os runs-on github action change 67a34be
  • trying to fix find tool test 4729903

14 December 2021

  • a bunch more work on improving primer base editing 0efe5e4
  • updating blueprint and TRC and fixing focus issue with popover 253160a
  • attempting to fix test 6436c36

6 December 2021

  • fixing issue with alignment minimap being messed up from react-draggable update a340f4a

6 December 2021

  • updating package.json 221f3ef
  • improving find tool behavior to better match chrome: #791; updating react-draggable to fix focus issue 041125a

3 December 2021

3 December 2021

  • adding the option to adjust the spacing in the sequence map #789
  • updating to react-dropzone 11.4.2 dd059cf
  • merging in master 93c54d4
  • Update yarn.lock file for Cypress 52a0457

12 November 2021

2 November 2021

  • Toggle 'Show ORF Translations' checkbox when enable/disable 'Show ORFs' checkbox in toolbar and properties tab #785
  • making sure demo options persist even if Show c930342
  • tiny a6e405a

24 October 2021

  • Fixed linearView start and end Axis text position #781
  • replace 'Orf' with 'ORF' (#12) #782

20 October 2021

  • updating to add info helpers to describe the amino acid colorings by family or hydrophobicity 5d3a02a

19 October 2021

  • adding the option to color by family or by hydrophobicity #778 fe9a57a

18 October 2021

  • updating rotateToCaretPosition cmd to be disabled when readOnly or sequenceLength=0 (fixes test) a291ab7

18 October 2021

  • CLN-33416: Fixed rotate and then show features, labels are not display correct issue (#10) #779
  • removing unused DrawChromatogram file 6035227

14 October 2021

  • adding the ability to choose from multiple possible imports 7378b8d
  • updating deps 0cab4de

13 October 2021

  • Fixed circular title rotate #777

12 October 2021

  • making sure the caret stays at the end of the sequence if deleting from the end; adding a teeny spacer to the end of the row view 4e0d00e
  • publishing new patch ee5e0c6

12 October 2021

12 October 2021

  • removing unecessary <br/> element f9f684f

11 October 2021

  • CLN-31169: Show oversize sequence title in tooltip #8
  • updating to just use the built in title component 1ff696f
  • updating the closeToasts command to close them programatically 157dfd9

6 October 2021

  • updating ubuntu version used in github action and cypress version c8ed5f5
  • updating GlobalDialog to handle closing any dialogs on unmount acbad7c

1 October 2021

  • Update index.js #774

28 September 2021

  • fixing issues with overlapsSelf parts that start at 0 and their selection layer info; fixing misc linting errors; improving Jump to Start/End button styling; adding a link to ove-electron 5b68bee

24 September 2021

  • ORFs AA size should not include the terminal codon translation * #771

23 September 2021

22 September 2021

  • fix 'Use GTG And CTG As Start Codons' checkbox status synchronizing between toolbar and properties table #765
  • publishing new patch 48c382c

20 September 2021

  • moving Advanced dropdown to TRC fc98549

17 September 2021

  • adding getAdditionalEditAnnotationComps user defined handler 86bd59e

15 September 2021

  • passing a getAdditionalCreateOpts function should allow for additional options to be specified under the Create > XXXX right click menu 608d089

15 September 2021

  • fix field filter (#5) #764

15 September 2021

  • CLN-31236: allow the number input more flexible #2
  • updating orf min size input handling b556a46

13 September 2021

  • fix more 'cutsites' (#4) #763
  • updating cypress 158c0b5

9 September 2021

2 September 2021

  • stopping findTool matchNumber from getting out of sync when sequence changes a9dcb2a
  • publishing new patch 5f6b7cb

2 September 2021

  • updating size calculations to accept overlapsSelf as a flag b3ddae2

1 September 2021

  • forcing more of the visibility settings when changing sequence modes 7f2f8cd

1 September 2021

  • updating isOligo mode to allow for inserting u's and t's 0a32d2f
  • fix toasts test 00239aa

30 August 2021

  • fixing showCircularity flag d501ebd

30 August 2021

  • display cutsites with cut sites (#3) #762
  • adding an isOligo mode to the editor d3dfe81
  • more cutsite -> cut site fixes and test fixes 776f5b3
  • more test fixing b9394c4

20 August 2021

  • pinning react-recompose to v0.31.1 464d06c

18 August 2021

16 August 2021

  • updating deps to fix overlapSelf copy/paste 791ff32

12 August 2021

  • updating helper text wording fceeb05

11 August 2021

11 August 2021

  • updating ove to improve SimpleCircularOrLinearView support for overlapsSelf flag e82e4bf

9 August 2021

  • updating TRC to get scrollbar fix 94728e7

9 August 2021

  • adding support for toggling circular view labels of assembly pieces, warnings, and lineageAnnotations #757 4a3ba25
  • adding support for displaying more assembly pieces, warnings, and lineageAnnotations #758 52871db
  • publishing new patch 774d216

9 August 2021

  • getting parts with overlapsSelf=true to copy correctly a37cec8

6 August 2021

  • improving support for parts that overlap themselves 72e5baa

5 August 2021

  • changing annotation flag doesOverlapSelf -> overlapsSelf for consistency 2cc6377

28 July 2021

28 July 2021

  • Add Editor prop to disable dragging tab #754
  • ignore yarn-error.log #752
  • change typeface to FontSource #753

19 July 2021

17 July 2021

  • fixing editable description in readonly mode bug #746 b6ffe14
  • publishing new patch e1fab14

17 July 2021

8 July 2021

  • fixing auto corrected lint error that broke the custom auto annotation 5dcfc2a
  • publishing new patch 9703fee

8 July 2021

  • updating autoAnnotate addon on to accept a getCustomAutoAnnotateList prop 48f13b1
  • fixing tests 2dc5d07

6 July 2021

  • Pass noRedux prop to DrawLabel to fix store is undefined when drawing Linear Label. #734
  • merging in master 06816e1
  • adding a way to filter features/part individually; adding a way to filter parts by length 78e7828
  • Merge pull request #731 from TeselaGen/dependabot/npm_and_yarn/ws-6.2.2 0b23946

6 July 2021

2 July 2021

  • adding a way to filter features/part individually; adding a way to filter parts by length 78e7828
  • Merge pull request #731 from TeselaGen/dependabot/npm_and_yarn/ws-6.2.2 0b23946
  • [Security] Bump ws from 6.2.1 to 6.2.2 f6e8b95

17 June 2021

  • fixing more tests bf1fb5e
  • updating tests to use new molecule type select instead of old isProtein 112d8f8

15 June 2021

  • Pass noRedux prop to DrawLabel to fix store is undefined when drawing Linear Label. #734

4 June 2021

  • adding an isRna flag to the update editor; updating the demo options to better handle reload; updating the demo option info helper to display more nicely 98f1303
  • improving passing of alignmentAnnotationVisibility to keep the default values unless explicitly overridden 9110008
  • updating gitignore ce25936

10 May 2021

  • fixing copy dna bps issue when in isProtein mode 1c1f04b
  • Merge pull request #723 from TeselaGen/dependabot/npm_and_yarn/hosted-git-info-2.8.9 b16b87e
  • [Security] Bump hosted-git-info from 2.7.1 to 2.8.9 089b618

6 May 2021

  • improving copy options for AA seqs 970ff67
  • Merge pull request #722 from TeselaGen/dependabot/npm_and_yarn/url-parse-1.5.1 18929a0
  • [Security] Bump url-parse from 1.4.3 to 1.5.1 8a53f7a

30 April 2021

  • updating autoAnnotate handler 5c29a41

28 April 2021

  • adding auto annotate tools + callback handlers 4105e5b

26 April 2021

  • Long external label truncate test #719
  • possibly fixing #714 issue with cutsites displayed on protein sequence 7896923

23 April 2021

  • Truncate long external labels row view #717

16 April 2021

  • removing copy click from first level menu item 9ced020

16 April 2021

13 April 2021

  • updating primer type to be primer_bind instead f001daa
  • Add missing band 37910ee

9 April 2021

  • more little tweaks to make things nice on mobile 7e3de14
  • Update trc 969133e

9 April 2021

9 April 2021

  • fixing bugs on mobile and adding a ladder + a test for the ladder 575efac
  • Update Ladder.js 463bc99
  • Fix imports d6fc753

27 March 2021

27 March 2021

26 March 2021

  • fixing breaking cutsite property view jump to c09dc57

26 March 2021

  • fixing broken getLowerCaseObj call caught by tests 965de84

26 March 2021

  • when searching for an enzyme that doesn't cut, now a message will appear in the cutsite filter about that enzyme f834159

23 March 2021

  • reverting back to yarn 87970a8
  • updating reflex element to not have a width of 100% initially to try to prevent the linear view from expanding to fit its entire contents; instead I give it a width of 300px to start fb6e2e8

16 March 2021

16 March 2021

  • hiding cutsite info table when there are 0 cutsites e36d2bf

16 March 2021

  • updating forms to make hitting enter key submit 0ae6ec5
  • publishing new patch 4c8953f
  • fixing breaking test due to enzyme hide issue c6530b8

16 March 2021

  • updating readme 66a982d
  • fixing small 0 rendering instead of null issue 500e29f

12 March 2021

  • removing scratch/test files from src 04a2b7c

12 March 2021

  • updating @teselagen/bio-parsers and adding test to make sure snapgene .dna file parsing works 2f24d23

11 March 2021

  • removing babel logic from nwb 84dc572

11 March 2021

10 March 2021

  • updating deps; targeting chrome 59 and above 34137b3

10 March 2021

  • updating modals; updating cutsite info dialog (these changes were accidentally stashed 0e0db61

10 March 2021

  • updating modals; updating cutsite info dialog (these changes were accidentally stashed e0eb8ab

10 March 2021

10 March 2021

  • adding an additional info modal for cutsites and cutsite groups; updating browserslist 820d01b

4 March 2021

4 March 2021

  • refactoring dialogs to use a better system 06e911b
  • fixing breaking enzyme tests f060efa
  • updating deps; changing how dialogs work; temporarily breaking dialogoverrides 5222812

26 February 2021

  • updating to use latest blueprint and to only target more recent browsers in our nwb config 5353e68

25 February 2021

  • fixing more breaking tests fb2e279

25 February 2021

  • fixing errors found by tests 168e219

25 February 2021

  • adding a new Limits option to the View menu where users can optionally choose to view more features/parts/cutsites than what is displayed by default 19485dd

19 February 2021

  • fixing issue with edit part/feature window initialization c1dade9

19 February 2021

  • fixing issue with edit part/feature window initialization 5545467

17 February 2021

16 February 2021

  • disable scrolling on the window.body when in full screen mode 7eb348e

15 February 2021

  • Bump axios from 0.18.1 to 0.21.1 #676
  • Improve enzyme management #586
  • Adjust label size #652
  • adding part tag search tests #642
  • Added option to filter features by length #626
  • Added "Edit > Change Circularity" option #622
  • Syncing fork #1
  • add pngFile on save option #605
  • Label line darkness #593
  • Es labels #585
  • More features #559
  • Bump react-easy-state from 5.1.0 to 6.1.3 #529
  • Bump react from 16.9.0 to 16.10.2 #535
  • Bump uniqid from 4.1.1 to 5.0.3 #515
  • Bump reselect from 3.0.1 to 4.0.0 #507
  • Configure cutsite label colors #514
  • Bump react-draggable from 3.2.1 to 3.3.2 #508
  • Bump husky from 1.3.1 to 3.0.4 #505
  • Bump react-transition-group from 2.6.0 to 4.2.2 #510
  • Bump react-markdown from 4.0.6 to 4.1.0 #506
  • [Security] Bump mixin-deep from 1.3.1 to 1.3.2 #512
  • [Security] Bump eslint-utils from 1.3.1 to 1.4.2 #511
  • Bump react-select from 2.4.3 to 3.0.4 #509
  • Bump graphql from 0.13.2 to 14.4.2 #503
  • Bump file-saver from 1.3.8 to 2.0.2 #502
  • Bump react-dom from 16.8.6 to 16.9.0 #501
  • Bump react-table from 6.9.2 to 6.10.0 #499
  • Bump gh-pages from 2.0.1 to 2.1.1 #498
  • Bump react-to-print from 2.0.0-alpha-4 to 2.3.2 #497
  • Bump recompose from 0.27.1 to 0.30.0 #496
  • Bump react-sizeme from 2.5.2 to 2.6.7 #494
  • [Security] Bump lodash from 4.17.11 to 4.17.15 #495
  • On import handler #491
  • Bump handlebars from 4.0.12 to 4.1.2 #488
  • Bump lodash-es from 4.17.11 to 4.17.15 #489
  • Bump axios from 0.18.0 to 0.18.1 #487
  • fixes new features dialog #483
  • Fixes edit part dialog having cut off buttons #482
  • Todoericsturman #480
  • Updating to use TgSelect instead of react-select #472
  • adding gc content with property to control number of decimal points #467
  • Adds part types #465
  • copy options for alignments #459
  • Protein editor #449
  • Alignment improvements & CDS feature translations #444
  • alignment demo and fixes #442
  • Converted buttons to blueprint #355
  • Enabled infinite scroll for alignment view. #278
  • Adding Alignment Tool #271
  • Added rendering of parts to circular and row views #206
  • Removed blueprint warnings on popovers #207
  • fixing dependencies #133
  • Read only #132
  • Ice integration #131
  • restore circularView ref #129
  • improve appearance of circular view #128
  • wip adding melting temp 8c0b90b
  • fixing weird overflowing dialog issue - continued c21940f
  • fixing weird overflowing dialog issue 6d457b7

10 February 2016

1.0.2

10 February 2016

  • Sidebar fixes #124
  • updating cerebral and related packages to latest version #125
  • sequence case toggling #119
  • mergin in branches #122
  • Tabular feature data #120
  • delete works now! #110
  • changing the bundle type produced by webpack in development #111
  • Flexible layout #108
  • freeze the Firefox version in Travis #109
  • Tnr editor drag signalify #103
  • adding a sidebar to the app #105
  • basic readOnly signals are set up and running #104
  • Select-inverse of current selection via Cmd/crtl-I #100
  • select all base pairs using cmd+A key #99
  • Tnr circ view no center #96
  • CSS modules #95
  • UI upgrades #94
  • modularizing yOffset calculations, fixing yOffset calculation for circular ranges #84
  • require the latest version of firefox in Travis #91
  • set up a "smoke test" by having a test run the app #85
  • removing unused modules from package.json #88
  • updating react infinite scroller to latest version #87
  • Tnr modularize #86
  • Style fixes #82
  • adding check-dependencies #58
  • adding a bare bones bottom status bar #53
  • Connects to #55 fixing reverse complement sequence #56
  • removing remnants of onBeforeUnload functionality #57
  • adding readme's for submodules #54
  • Fixing tests #52
  • Tnr fixingWarnings #50
  • Tnr proptype decorators #49
  • pinning cerebral version to 0.20.5 due to error in latest version #48
  • Use Karma test runner for Travis CI integration #47
  • Annotations #45
  • updating signal flows to use reusable "getter" #37
  • EnzymeJson #35
  • LinterRules #36
  • Tnr react transform #34
  • waffle.io Badge #33
  • Add a Gitter chat badge to README.md #14
  • Tnr mapView #13
  • Tnr topRender #10
  • Reorganization! #9
  • Enzyme calculations and testing #8
  • getting rid of vector editor state #7
  • Tnr infiniteNpm #4
  • BaobabV2InfiniteScrollerModular #2
  • fixing delete bug and removing some warnings from eslint df0058d
  • added insert character tests 0497376
  • fixing up syntax in actions and signals 602041c