diff --git a/README.md b/README.md index a88803d..86f7415 100644 --- a/README.md +++ b/README.md @@ -62,7 +62,7 @@ Group flattened kingdoms (child ranks of domains [level 1]) to one file, group a paladin-plugins.py @@taxonomy -i input.tsv -q 30 -t children -l 1 @@write first.txt @@taxonomy -i input.tsv -q 30 -t species -l 0 @@write second.txt @@plotting -s 20 15 -g 1 2 @@plotting -i first.txt -l 10 -c 0 0 @@plotting -i second.txt -l 10 -c 0 1 -o chart.png ``` -Download a custom UniProt report with organism, protein names, go terms, comments, ec number, and kegg cross reference for fields, and save it to a file. The full list of available fields and database cross-references can be found on the [UniProt site](http://www.uniprot.org/help/query-fields): +Download a custom UniProt report with organism, protein names, go terms, comments, ec number, and kegg cross reference for fields, and save it to a file. The full list of available fields and database cross-references can be found on the [UniProt site](http://www.uniprot.org/help/uniprotkb_column_names): ``` paladin-plugins.py @@uniprot -i input.sam -c Organism "protein names" go comments ec "database(KEGG)" @@write report.txt ```