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DESCRIPTION
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DESCRIPTION
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Package: spaSim
Title: Spatial point data simulator for tissue images
Version: 1.3.1
Date: 2023-05-22
Authors@R:
c(person("Yuzhou", "Feng", email = "[email protected]", role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-2955-4053")),
person("Anna", "Trigos", email = "[email protected]", role = c("aut"),
comment = c(ORCID = "0000-0002-5915-2952")))
Description: A suite of functions for simulating spatial patterns of cells in
tissue images. Output images are multitype point data in SingleCellExperiment
format. Each point represents a cell, with its 2D locations and cell type.
Potential cell patterns include background cells, tumour/immune cell clusters,
immune rings, and blood/lymphatic vessels.
License: Artistic-2.0
URL: https://trigosteam.github.io/spaSim/
BugReports: https://support.bioconductor.org/t/spaSim
biocViews: StatisticalMethod, Spatial, BiomedicalInformatics
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.2
Imports:
ggplot2,
methods,
stats,
dplyr,
spatstat.geom,
spatstat.random,
SpatialExperiment,
SummarizedExperiment,
RANN
Depends:
R (>= 4.2.0)
LazyData: true
Suggests:
RefManageR,
BiocStyle,
knitr,
testthat (>= 3.0.0),
sessioninfo,
rmarkdown,
markdown
Config/testthat/edition: 3
VignetteBuilder: knitr