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chipseq Installation

The UCL-BLIC/chipseq pipeline is already installed in legion and myriad. You just need to load nextflow and start using it:

module load blic-modules
module load nextflow

nextflow_chipseq --reads '*_R{1,2}.fastq.gz' --macsconfig 'macssetup.config'

By default, the pipeline runs with the legion configuration profile conf/legion.config if you submit it from legion, and with the myriad config conf/myriad.config if you send the job from myriad.

The 'standard' configuration (using the local executor) is not enabled.