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MG can produce blank output when eroding non-binary WM mask #19

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bathomas opened this issue Jun 20, 2017 · 1 comment
Open

MG can produce blank output when eroding non-binary WM mask #19

bathomas opened this issue Jun 20, 2017 · 1 comment
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@bathomas
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The erosion of the WM using itk::BinaryErodeImageFilter can fail. Changing to itk::GrayscaleErodeImageFilter appears to fix the problem.

@bathomas bathomas added the bug label Jun 20, 2017
@bilgelm
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bilgelm commented Sep 16, 2019

I'm encountering blank outputs with MG for multiple scans. The masks contain 0's and 1's only, but the data type stored in the nifti format mask file is uint8. I will try what you suggested - is it simply changing itk::BinaryErodeImageFilter to itk::GrayscaleErodeImageFilter in petpvcMullerGartnerImageFilter.h (and using the corresponding #include)?

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