README.md

Sequence Analysis Bootcamp Spring 2024

This bootcamp intend to use UMMS Cluster and requires UMMS cluster account.

• If you haven't join into ViaFoundry/Dolphin Group, please follow steps in our ViaFoundry/Dolphin guide.

1. Session 1: Introduction to Bootcamp
   

   Session 1.1: UMass Cluster (Optional)
   

   Session 1.2: Useful commands and tools (Optional)
   

   Session 1.3: Genomic resources
   

   Session 1.4: FASTA/FASTQ
   

   Session 1.5: SAM/BAM
   
   

2. Session 2: ViaFoundry Training - RNA-Seq Pipeline
   
   

3. Session 3: scRNA-Seq Analysis
   
   

4. Session 4: Differential expression analysis in R
   

   Session 4: Differential expression analysis in Foundry
   

   Session 4: R and R Studio
   

   Session 4: Differential expression analysis with DEBrowser