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Was messing around with this and ran into a couple problems with that thought.
The update script gets run under the Ombi.service in sytemd so when the update script wants to stop the service, the update script gets killed as well.
Will play around some more with it, to get a working solution and submit a PR if I have time.
Edited by Unimatrix0: Removed comments unrelated to this issue.
We have the option in ombi to specify a custom script to update ombi. See wiki entry here: https://github.com/tidusjar/Ombi/wiki/Update-Settings
This script would get executed everytime ombi detects there is a new update.
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