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bruker_OE_IR_VFA_DCE_session.json
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bruker_OE_IR_VFA_DCE_session.json
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{
"Class": "BrukerSession",
"Name": "OE_IR_DCE_VFA",
"study": "PRIME196",
"config": "bruker_process.cfg",
"pre_processes": [
"OE_IR_DCE_VFA.cwl < OE_IR_DCE_VFA.yml.jinja"
],
"post_processes": [
"OE_DCE_summary < OE_DCE_summary.cfg"
],
"collections": [
{
"Class": "BrukerCollection",
"Name": "OE",
"bids_dir": "IR",
"receiver_gain_series": "OE_400",
"series": [
{
"Class": "BrukerSeries",
"Name": "OE_400",
"bids_filename": "OE_400",
"bids_overwrite": true,
"match_criteria": [
{
"Class": "BrukerSeriesMatch",
"fail_action": "error",
"field": "InversionTime",
"match_value": 400
}
],
"max_timepoints": 1,
"min_timepoints": 1,
"required_fields": [
"InversionTime"
],
"scan_name_contains": "MPRAGE_400ms",
"squash_dimension": null
},
{
"Class": "BrukerSeries",
"Name": "OE_800",
"bids_filename": "OE_800",
"bids_overwrite": true,
"match_criteria": [
{
"Class": "BrukerSeriesMatch",
"fail_action": "error",
"field": "InversionTime",
"match_value": 800
}
],
"max_timepoints": 1,
"min_timepoints": 1,
"required_fields": [
"InversionTime"
],
"scan_name_contains": "MPRAGE_800ms",
"squash_dimension": null
},
{
"Class": "BrukerSeries",
"Name": "OE_1000",
"bids_filename": "OE_1000",
"bids_overwrite": true,
"match_criteria": [
{
"Class": "BrukerSeriesMatch",
"fail_action": "error",
"field": "InversionTime",
"match_value": 1000
}
],
"max_timepoints": 1,
"min_timepoints": 1,
"required_fields": [
"InversionTime"
],
"scan_name_contains": "MPRAGE_1000ms",
"squash_dimension": null
},
{
"Class": "BrukerSeries",
"Name": "OE_1500",
"bids_filename": "OE_1500",
"bids_overwrite": true,
"match_criteria": [
{
"Class": "BrukerSeriesMatch",
"fail_action": "error",
"field": "InversionTime",
"match_value": 1500
}
],
"max_timepoints": 1,
"min_timepoints": 1,
"required_fields": [
"InversionTime"
],
"scan_name_contains": "MPRAGE_1500ms",
"squash_dimension": null
},
{
"Class": "BrukerSeries",
"Name": "OE_2000",
"bids_filename": "OE_2000",
"bids_overwrite": true,
"match_criteria": [
{
"Class": "BrukerSeriesMatch",
"fail_action": "error",
"field": "InversionTime",
"match_value": 2000
}
],
"max_timepoints": 1,
"min_timepoints": 1,
"required_fields": [
"InversionTime"
],
"scan_name_contains": "MPRAGE_2000ms",
"squash_dimension": null
},
{
"Class": "BrukerSeries",
"Name": "OE_2500",
"bids_filename": "OE_2500",
"bids_overwrite": true,
"match_criteria": [
{
"Class": "BrukerSeriesMatch",
"fail_action": "error",
"field": "InversionTime",
"match_value": 2500
}
],
"max_timepoints": 1,
"min_timepoints": 1,
"required_fields": [
"InversionTime"
],
"scan_name_contains": "MPRAGE_2500ms",
"squash_dimension": null
},
{
"Class": "BrukerSeries",
"Name": "OE_dynamic",
"bids_dir": "oe",
"bids_filename": "oe_dyn",
"bids_overwrite": true,
"match_criteria": [
{
"Class": "BrukerSeriesMatch",
"fail_action": "error",
"field": "InversionTime",
"match_value": 2000
}
],
"max_timepoints": 1000000,
"min_timepoints": 16,
"required_fields": [
"InversionTime"
],
"scan_name_contains": "MPRAGE_2000ms",
"squash_dimension": null
}
]
},
{
"Class": "BrukerCollection",
"Name": "DCE",
"bids_dir": "VFA",
"receiver_gain_series": "VFA_5",
"series": [
{
"Class": "BrukerSeries",
"Name": "VFA_5",
"bids_filename": "VFA_5",
"bids_overwrite": true,
"match_criteria": [
{
"Class": "BrukerSeriesMatch",
"fail_action": "warning",
"field": "FlipAngle",
"match_value": 5
}
],
"max_timepoints": 1,
"min_timepoints": 1,
"required_fields": [
"FlipAngle"
],
"scan_name_contains": "MGE_FA5",
"squash_dimension": {
"Class": "BrukerSquashDimension",
"dimension": "necho",
"slices": [0],
"method": "select",
"output_suffix": "_echo1"
}
},
{
"Class": "BrukerSeries",
"Name": "VFA_2",
"bids_filename": "VFA_2",
"bids_overwrite": true,
"match_criteria": [
{
"Class": "BrukerSeriesMatch",
"fail_action": "warning",
"field": "FlipAngle",
"match_value": 2
}
],
"max_timepoints": 1,
"min_timepoints": 1,
"required_fields": [
"FlipAngle"
],
"scan_name_contains": "MGE_FA2",
"squash_dimension": {
"Class": "BrukerSquashDimension",
"dimension": "necho",
"slices": [0],
"method": "select",
"output_suffix": "_echo1"
}
},
{
"Class": "BrukerSeries",
"Name": "VFA_15",
"bids_filename": "VFA_15",
"bids_overwrite": true,
"match_criteria": [
{
"Class": "BrukerSeriesMatch",
"fail_action": "warning",
"field": "FlipAngle",
"match_value": 15
}
],
"max_timepoints": 1,
"min_timepoints": 1,
"required_fields": [
"FlipAngle"
],
"scan_name_contains": "MGE_FA15",
"squash_dimension": {
"Class": "BrukerSquashDimension",
"dimension": "necho",
"slices": [0],
"method": "select",
"output_suffix": "_echo1"
}
},
{
"Class": "BrukerSeries",
"Name": "VFA_30",
"bids_filename": "VFA_30",
"bids_overwrite": true,
"match_criteria": [
{
"Class": "BrukerSeriesMatch",
"fail_action": "warning",
"field": "FlipAngle",
"match_value": 30
}
],
"max_timepoints": 1,
"min_timepoints": 1,
"required_fields": [
"FlipAngle"
],
"scan_name_contains": "MGE_FA30",
"squash_dimension": {
"Class": "BrukerSquashDimension",
"dimension": "necho",
"slices": [0],
"method": "select",
"output_suffix": "_echo1"
}
},
{
"Class": "BrukerSeries",
"Name": "dynamic",
"bids_dir": "dce",
"bids_filename": "dce_dyn",
"bids_overwrite": true,
"match_criteria": [
{
"Class": "BrukerSeriesMatch",
"fail_action": "warning",
"field": "FlipAngle",
"match_value": 30
}
],
"max_timepoints": 1,
"min_timepoints": 20,
"required_fields": [
"FlipAngle"
],
"scan_name_contains": "MGE_FA30",
"squash_dimension": {
"Class": "BrukerSquashDimension",
"dimension": "necho",
"slices": [0],
"method": "select",
"output_suffix": "_echo1"
}
}
]
}
]
}