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processing bam file steps #18

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averagehat opened this issue Feb 10, 2016 · 1 comment

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averagehat commented Feb 10, 2016

preprocess bam: Jip file will tag reads, convert to bam, sort, index
freebayes: jip file for running freebayes (seems like overkill)
consensus: jip file for running consensus.py

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necrolyte2 commented Feb 10, 2016

Let's just keep using #7. It is nice to have it all in one place

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