example.full.env

# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #
#
#   Docker Compose
#
# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #

# Image Versions
VDI_SERVICE_TAG=latest
VDI_CACHE_DB_TAG=latest
VDI_KAFKA_TAG=3.4.0

VDI_PLUGIN_EXAMPLE_TAG=latest
VDI_PLUGIN_GENELIST_TAG=latest
VDI_PLUGIN_ISASIMPLE_TAG=latest
VDI_PLUGIN_BIGWIG_TAG=latest
VDI_PLUGIN_BIOM_TAG=latest
VDI_PLUGIN_RNASEQ_TAG=latest

# Paths
DATASET_DIRECTORY_SOURCE_PATH=/var/www/Common/userDatasets/vdi_datasets_feat_s/
DATASET_DIRECTORY_TARGET_PATH=/datasets

# VDI Service Labels
VDI_SERVICE_WATCHTOWER=true

VDI_POSTGRES_WATCHTOWER=true

PLUGIN_EXAMPLE_WATCHTOWER=true
PLUGIN_GENELIST_WATCHTOWER=true
PLUGIN_ISASIMPLE_WATCHTOWER=true
PLUGIN_BIGWIG_WATCHTOWER=true
PLUGIN_BIOM_WATCHTOWER=true
PLUGIN_RNASEQ_WATCHTOWER=true

# Traefik
TRAEFIK_SERVICE_ROUTER=vdi-dev
TRAEFIK_VDI_HOST=vdi-dev.apidb.org
USE_TRAEFIK_SSL=true
TRAEFIK_ENTRYPOINTS=local

# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #
#
#   Modules
#
# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #

# # # # # # # # # # # # # # # # # # # # # #
#
#   Rest Service
#
# # # # # # # # # # # # # # # # # # # # # #

# Exposed HTTP port for the rest service.
VDI_SERVICE_HTTP_PORT=80

# Authentication secret key/salt
AUTH_SECRET_KEY=

# Administration endpoint auth secret key
ADMIN_AUTH_TOKEN=

# Oauth Service Configuration
OAUTH_CLIENT_ID=
OAUTH_CLIENT_SECRET=
KEY_STORE_FILE=
KEY_STORE_PASS_PHRASE=
OAUTH_URL=https://eupathdb.org/oauth

# LDAP server(s) that will be used to lookup oracle connection details.
LDAP_SERVER=

# Base DN used in LDAP queries for Oracle connection details
ORACLE_BASE_DN=ou=applications,dc=apidb,dc=org

# Enable cross-origin request headers
ENABLE_CORS=false

# Max upload file size
MAX_UPLOAD_FILE_SIZE=1073741824

# User upload quota cap
USER_UPLOAD_QUOTA=10737418240

# # # # # # # # # # # # # # # # # # # # # #
#
#   Dataset Reconciler
#
# Configuration details specific to the
# automatic dataset reconciler module.
#
# # # # # # # # # # # # # # # # # # # # # #

# Frequency at which the dataset reconciler will attempt to run automatically.
RECONCILER_FULL_RUN_INTERVAL=6h
RECONCILER_SLIM_RUN_INTERVAL=5m

# Determines whether reconciler should run automatically.
RECONCILER_ENABLED=false

# Determines whether the reconciler should perform deletes
RECONCILER_DELETES_ENABLED=false

# # # # # # # # # # # # # # # # # # # # # #
#
#   Hard Delete Trigger Handler
#
# Configuration details specific to the
# dataset hard deletion event handler
# module.
#
# # # # # # # # # # # # # # # # # # # # # #

# Kafka client ID for the hard delete trigger handler's Kafka consumer client.
HARD_DELETE_HANDLER_KAFKA_CONSUMER_CLIENT_ID=hard-delete-handler

# How many workers should the hard delete handler module spin up to handle
# dataset hard deletion triggers.
HARD_DELETE_HANDLER_WORKER_POOL_SIZE=1

# How many unprocessed events can be waiting in the hard delete handler module's
# worker pool job queue before the handler stops fetching more trigger events.
HARD_DELETE_HANDLER_WORK_QUEUE_SIZE=100

# # # # # # # # # # # # # # # # # # # # # #
#
#   Import Trigger Handler
#
# Configuration details specific to the
# dataset import event handler module.
#
# # # # # # # # # # # # # # # # # # # # # #

# Kafka client ID for the import trigger handler's Kafka consumer client.
IMPORT_HANDLER_KAFKA_CONSUMER_CLIENT_ID=import-handler

# How many workers should the import handler module spin up to handle dataset
# import triggers.
IMPORT_HANDLER_WORKER_POOL_SIZE=10

# How many unprocessed events can be waiting in the import handler module's
# worker pool job queue before the handler stops fetching more trigger events.
IMPORT_HANDLER_WORK_QUEUE_SIZE=5

# # # # # # # # # # # # # # # # # # # # # #
#
#   Install Data Trigger Handler
#
# Configuration details specific to the
# dataset installation event handler
# module.
#
# # # # # # # # # # # # # # # # # # # # # #

# Kafka client ID for the install-data trigger handler's Kafka consumer client.
INSTALL_DATA_HANDLER_KAFKA_CONSUMER_CLIENT_ID=install-data-handler

# How many workers should the install module spin up to handle dataset install
# triggers.
INSTALL_DATA_HANDLER_WORKER_POOL_SIZE=5

# How many unprocessed events can be waiting in the install-data handler
# module's worker pool job queue before the handler stops fetching more trigger
# events.
INSTALL_DATA_HANDLER_WORK_QUEUE_SIZE=5

# # # # # # # # # # # # # # # # # # # # # #
#
#   Pruner
#
# Configuration details specific to the
# pruner module.
#
# # # # # # # # # # # # # # # # # # # # # #

# Age at which a soft-deleted dataset becomes a candidate for pruning from the
# VDI system.
DATASET_PRUNING_DELETION_THRESHOLD=5d

# Frequency at which the pruner will run automatically.
DATASET_PRUNING_INTERVAL=6h

# Interval at which the pruner module should wake up and check for a service
# shutdown signal.  Unless a pruning job is actively running, this value
# controls the maximum wait time for the module to stop after a shutdown has
# been requested.
DATASET_PRUNING_WAKEUP_INTERVAL=10s

# # # # # # # # # # # # # # # # # # # # # #
#
#   Share Trigger Handler
#
# Configuration details specific to the
# dataset share event handler module.
#
# # # # # # # # # # # # # # # # # # # # # #

# Kafka Client ID for the share trigger handler's Kafka consumer client.
SHARE_HANDLER_KAFKA_CONSUMER_CLIENT_ID=share-handler

# How many workers should the share handler module spin up to handle dataset
# share triggers.
SHARE_HANDLER_WORKER_POOL_SIZE=10

# How many unprocessed events can be waiting in the share handler module's
# worker pool job queue before the handler stops fetching more trigger events.
SHARE_HANDLER_WORK_QUEUE_SIZE=5

# # # # # # # # # # # # # # # # # # # # # #
#
#   Soft Delete Trigger Handler
#
# Configuration details specific to the
# dataset soft delete event handler module.
#
# # # # # # # # # # # # # # # # # # # # # #

# Kafka client ID for the soft delete trigger handler's Kafka consumer client.
SOFT_DELETE_HANDLER_KAFKA_CONSUMER_CLIENT_ID=soft-delete-handler

# How many workers should the soft-delete handler module spin up to handle
# dataset soft delete triggers.
SOFT_DELETE_HANDLER_WORKER_POOL_SIZE=10

# How many unprocessed events can be waiting in the soft delete handler module's
# worker pool job queue before the handler stops fetching more trigger events.
SOFT_DELETE_HANDLER_WORK_QUEUE_SIZE=5

# # # # # # # # # # # # # # # # # # # # # #
#
#   Update Meta Trigger Handler
#
# Configuration details specific to the
# update metadata event handler module.
#
# # # # # # # # # # # # # # # # # # # # # #

# Kafka client ID for the update meta trigger handler's Kafka consumer client.
UPDATE_META_HANDLER_KAFKA_CONSUMER_CLIENT_ID=update-meta-handler

# How many workers should the update meta handler module spin up to handle
# dataset metadata update triggers.
UPDATE_META_HANDLER_WORKER_POOL_SIZE=10

# How many unprocessed events can be waiting in the update meta handler module's
# worker pool job queue before the handler stops fetching more trigger events.
UPDATE_META_HANDLER_WORK_QUEUE_SIZE=5

# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #
#
#   Components
#
# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #

# # # # # # # # # # # # # # # # # # # # # #
#
#   Cache DB
#
# # # # # # # # # # # # # # # # # # # # # #

CACHE_DB_USERNAME=someUser
CACHE_DB_PASSWORD=somePassword
CACHE_DB_HOST=cache-db
CACHE_DB_PORT=5432
CACHE_DB_POOL_SIZE=5

# # # # # # # # # # # # # # # # # # # # # #
#
#   Kafka
#
# # # # # # # # # # # # # # # # # # # # # #

KAFKA_SERVERS=kafka:9092
KAFKA_CONSUMER_GROUP_ID=vdi-kafka-consumers
KAFKA_ADVERTISED_LISTENERS=PLAINTEXT://kafka:9092

# TODO: This should be split into separate producer client IDs for all modules that produce kafka messages.
KAFKA_PRODUCER_CLIENT_ID=vdi-event-router

KAFKA_TOPIC_HARD_DELETE_TRIGGERS=hard-delete-triggers
KAFKA_TOPIC_IMPORT_TRIGGERS=import-triggers
KAFKA_TOPIC_INSTALL_TRIGGERS=install-triggers
KAFKA_TOPIC_SHARE_TRIGGERS=share-triggers
KAFKA_TOPIC_SOFT_DELETE_TRIGGERS=soft-delete-triggers
KAFKA_TOPIC_UPDATE_META_TRIGGERS=update-meta-triggers

KAFKA_MESSAGE_KEY_HARD_DELETE_TRIGGERS=hard-delete-trigger
KAFKA_MESSAGE_KEY_IMPORT_TRIGGERS=import-trigger
KAFKA_MESSAGE_KEY_INSTALL_TRIGGERS=install-trigger
KAFKA_MESSAGE_KEY_SHARE_TRIGGERS=share-trigger
KAFKA_MESSAGE_KEY_SOFT_DELETE_TRIGGERS=soft-delete-trigger
KAFKA_MESSAGE_KEY_UPDATE_META_TRIGGERS=update-meta-trigger

# # # # # # # # # # # # # # # # # # # # # #
#
#   Rabbit
#
# # # # # # # # # # # # # # # # # # # # # #

# Defines whether the rabbitmq network is external to the docker stack.
# On prod and local dev this will be false, however on dev/qa it will be true.
RABBITMQ_IS_LOCAL=false

# Name of the connection to the RabbitMQ service.  This value will show in the
# RabbitMQ logs and management console to identify the VDI service's connection.
GLOBAL_RABBIT_CONNECTION_NAME=vdi

# Hostname of the global RabbitMQ instance that the VDI service will connect to.
GLOBAL_RABBIT_HOST=rabbit-external

# Port to use when connecting to the global RabbitMQ instance.
GLOBAL_RABBIT_PORT=5672

# Credentials username used to authenticate with the global RabbitMQ instance.
GLOBAL_RABBIT_USERNAME=someUser

# Credentials password used to authenticate with the global RabbitMQ instance.
GLOBAL_RABBIT_PASSWORD=somePassword

# Whether the VDI should use TLS/SSL when connecting to the RabbitMQ instance.
# This should be set to false for local development and true when running in a
# server environment.
GLOBAL_RABBIT_USE_TLS=false

# Frequency that the global RabbitMQ instance will be polled for new messages
# from MinIO.
GLOBAL_RABBIT_VDI_POLLING_INTERVAL=1s

# Name of the target RabbitMQ exchange that will be declared by both the MinIO
# instance and the VDI service.
#
# THIS VALUE MUST BE THE SAME AS THE VALUE CONFIGURED IN MINIO.
GLOBAL_RABBIT_VDI_EXCHANGE_NAME=vdi-bucket-notifications

# Exchange type as declared bt the MinIO connection to the global RabbitMQ
# instance.
#
# THIS VALUE MUST BE THE SAME AS THE VALUE CONFIGURED IN MINIO.
GLOBAL_RABBIT_VDI_EXCHANGE_TYPE=direct

# Whether the exchange should be auto deleted when the connections from MinIO
# and the VDI service are closed.
#
# THIS VALUE MUST BE THE SAME AS THE VALUE CONFIGURED IN MINIO.
GLOBAL_RABBIT_VDI_EXCHANGE_AUTO_DELETE=false

# Whether the exchange should be durable (persisted to disk).
#
# THIS VALUE MUST BE THE SAME AS THE VALUE CONFIGURED IN MINIO.
GLOBAL_RABBIT_VDI_EXCHANGE_DURABLE=true

# Additional arguments to pass to the exchange declaration.
#GLOBAL_RABBIT_VDI_EXCHANGE_ARGUMENTS=an:argument,another:argument

# Name of the RabbitMQ queue to declare.
#
# THIS VALUE MUST BE THE SAME AS THE VALUE CONFIGURED IN MINIO.
GLOBAL_RABBIT_VDI_QUEUE_NAME=vdi-bucket-notifications

# Whether the queue should be auto deleted when the connections from MinIO and
# the VDI service are closed.
#
# THIS VALUE MUST BE THE SAME AS THE VALUE CONFIGURED IN MINIO.
GLOBAL_RABBIT_VDI_QUEUE_AUTO_DELETE=false

# Whether the queue should be declared as exclusive to the VDI service.  This
# value should always be `false` under normal circumstances.
GLOBAL_RABBIT_VDI_QUEUE_EXCLUSIVE=false

# Whether the queue should be durable (persisted to disk).
#
# THIS VALUE MUST BE THE SAME AS THE VALUE CONFIGURED IN MINIO.
GLOBAL_RABBIT_VDI_QUEUE_DURABLE=true

# Additional arguments to pass to the queue declaration.
#GLOBAL_RABBIT_VDI_QUEUE_ARGUMENTS=an:argument,another:argument

GLOBAL_RABBIT_VDI_ROUTING_KEY=vdi-bucket-notifications
#GLOBAL_RABBIT_VDI_ROUTING_ARGUMENTS=an:argument,another:argument

# # # # # # # # # # # # # # # # # # # # # #
#
#   MinIO (S3)
#
# # # # # # # # # # # # # # # # # # # # # #

# Name for the VDI dataset container bucket.
#
# In server environments, this must line up with the name of the bucket that was
# created for VDI.
#
# In local dev, this also controls the name of the bucket to be created for VDI,
# meaning this value doesn't need to change.
S3_BUCKET_NAME=some-bucket

# Host address for the S3/MinIO instance that VDI will store datasets in.
#
# In local dev, this must align with the name of the MinIO service as defined in
# docker-compose.dev.yml
S3_HOST=minio-external

# Port that VDI will use to make requests to the S3/MinIO API.
S3_PORT=9000

# Whether HTTPS should be used when communicating with S3/MinIO.
#
# In server environments this will be true, in local dev this will be false.
S3_USE_HTTPS=false

# Access token used to authenticate with the MinIO instance.
#
# In local dev this value doesn't matter as long as it is non-blank.
S3_ACCESS_TOKEN=someToken

# Secret key used to authenticate with the MinIO instance.
#
# In local dev this value doesn't matter as long as it is non-blank.
S3_SECRET_KEY=someSecretKey

# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #
#
#   VDI Plugin Declarations
#
# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #

# Global Plugin Config
SITE_BUILD=build-65

# No-Op Plugin
PLUGIN_HANDLER_NOOP_NAME=noop
PLUGIN_HANDLER_NOOP_DISPLAY_NAME="Example Plugin"
PLUGIN_HANDLER_NOOP_VERSION=1.0
PLUGIN_HANDLER_NOOP_ADDRESS=example:80
PLUGIN_HANDLER_NOOP_PROJECT_IDS=
PLUGIN_HANDLER_NOOP_CUSTOM_PATH=
PLUGIN_HANDLER_NOOP_IMPORT_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_NOOP_INSTALL_DATA_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_NOOP_INSTALL_META_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_NOOP_UNINSTALL_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_NOOP_CHECK_COMPAT_SCRIPT_MAX_DURATION=1h

# GeneList Plugin
PLUGIN_HANDLER_GENELIST_NAME=genelist
PLUGIN_HANDLER_GENELIST_DISPLAY_NAME="Gene List"
PLUGIN_HANDLER_GENELIST_VERSION=1.0
PLUGIN_HANDLER_GENELIST_ADDRESS=genelist:80
PLUGIN_HANDLER_GENELIST_PROJECT_IDS=AmoebaDB,CryptoDB,FungiDB,GiardiaDB,HostDB,MicrosporidiaDB,PiroplasmaDB,PlasmoDB,ToxoDB,TrichDB,TriTrypDB,VectorBase
PLUGIN_HANDLER_GENELIST_CUSTOM_PATH=
PLUGIN_HANDLER_GENELIST_IMPORT_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_GENELIST_INSTALL_DATA_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_GENELIST_INSTALL_META_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_GENELIST_UNINSTALL_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_GENELIST_CHECK_COMPAT_SCRIPT_MAX_DURATION=1h

# ISASimple Plugin
PLUGIN_HANDLER_ISASIMPLE_NAME=isasimple
PLUGIN_HANDLER_ISASIMPLE_DISPLAY_NAME="ISA Simple"
PLUGIN_HANDLER_ISASIMPLE_VERSION=1.0
PLUGIN_HANDLER_ISASIMPLE_ADDRESS=isasimple:80
PLUGIN_HANDLER_ISASIMPLE_PROJECT_IDS=ClinEpiDB
PLUGIN_HANDLER_ISASIMPLE_CUSTOM_PATH=
PLUGIN_HANDLER_ISASIMPLE_IMPORT_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_ISASIMPLE_INSTALL_DATA_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_ISASIMPLE_INSTALL_META_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_ISASIMPLE_UNINSTALL_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_ISASIMPLE_CHECK_COMPAT_SCRIPT_MAX_DURATION=1h

# BigWig Plugin
PLUGIN_HANDLER_BIGWIG_NAME=bigwigfiles
PLUGIN_HANDLER_BIGWIG_DISPLAY_NAME=Bigwig
PLUGIN_HANDLER_BIGWIG_VERSION=1.0
PLUGIN_HANDLER_BIGWIG_ADDRESS=bigwig:80
PLUGIN_HANDLER_BIGWIG_PROJECT_IDS=AmoebaDB,CryptoDB,FungiDB,GiardiaDB,HostDB,MicrosporidiaDB,PiroplasmaDB,PlasmoDB,ToxoDB,TrichDB,TriTrypDB,VectorBase
PLUGIN_HANDLER_BIGWIG_CUSTOM_PATH=
PLUGIN_HANDLER_BIGWIG_IMPORT_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_BIGWIG_INSTALL_DATA_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_BIGWIG_INSTALL_META_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_BIGWIG_UNINSTALL_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_BIGWIG_CHECK_COMPAT_SCRIPT_MAX_DURATION=1h

# BIOM Plugin
PLUGIN_HANDLER_BIOM_NAME=biom
PLUGIN_HANDLER_BIOM_DISPLAY_NAME=BIOM
PLUGIN_HANDLER_BIOM_VERSION=1.0
PLUGIN_HANDLER_BIOM_ADDRESS=biom:80
PLUGIN_HANDLER_BIOM_PROJECT_IDS=MicrobiomeDB
PLUGIN_HANDLER_BIOM_CUSTOM_PATH=
PLUGIN_HANDLER_BIOM_IMPORT_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_BIOM_INSTALL_DATA_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_BIOM_INSTALL_META_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_BIOM_UNINSTALL_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_BIOM_CHECK_COMPAT_SCRIPT_MAX_DURATION=1h

# RNAseq Plugin
PLUGIN_HANDLER_RNASEQ_NAME=rnaseq
PLUGIN_HANDLER_RNASEQ_DISPLAY_NAME=RNA-Seq
PLUGIN_HANDLER_RNASEQ_VERSION=1.0
PLUGIN_HANDLER_RNASEQ_ADDRESS=rnaseq:80
PLUGIN_HANDLER_RNASEQ_PROJECT_IDS=AmoebaDB,CryptoDB,FungiDB,GiardiaDB,HostDB,MicrosporidiaDB,PiroplasmaDB,PlasmoDB,ToxoDB,TrichDB,TriTrypDB,VectorBase
PLUGIN_HANDLER_RNASEQ_CUSTOM_PATH=
PLUGIN_HANDLER_RNASEQ_IMPORT_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_RNASEQ_INSTALL_DATA_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_RNASEQ_INSTALL_META_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_RNASEQ_UNINSTALL_SCRIPT_MAX_DURATION=1h
PLUGIN_HANDLER_RNASEQ_CHECK_COMPAT_SCRIPT_MAX_DURATION=1h

# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #
#
#   Application Database Declarations
#
# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #

DB_CONNECTION_ENABLED_AMOEBA=false
DB_CONNECTION_NAME_AMOEBA=AmoebaDB
DB_CONNECTION_LDAP_AMOEBA=ameb063n
DB_CONNECTION_PASS_AMOEBA=someDBPass
DB_CONNECTION_DATA_SCHEMA_AMOEBA=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_AMOEBA=vdi_control_dev_n
DB_CONNECTION_POOL_SIZE_AMOEBA=5

DB_CONNECTION_ENABLED_CRYPTO=false
DB_CONNECTION_NAME_CRYPTO=CryptoDB
DB_CONNECTION_LDAP_CRYPTO=cryp063n
DB_CONNECTION_PASS_CRYPTO=someDBPass
DB_CONNECTION_DATA_SCHEMA_CRYPTO=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_CRYPTO=vdi
DB_CONNECTION_POOL_SIZE_CRYPTO=5

DB_CONNECTION_ENABLED_FUNGI=false
DB_CONNECTION_NAME_FUNGI=FungiDB
DB_CONNECTION_LDAP_FUNGI=fung063n
DB_CONNECTION_PASS_FUNGI=someDBPass
DB_CONNECTION_DATA_SCHEMA_FUNGI=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_FUNGI=vdi_control_dev_n
DB_CONNECTION_POOL_SIZE_FUNGI=5

DB_CONNECTION_ENABLED_GIARDIA=false
DB_CONNECTION_NAME_GIARDIA=GiardiaDB
DB_CONNECTION_LDAP_GIARDIA=giar063n
DB_CONNECTION_PASS_GIARDIA=someDBPass
DB_CONNECTION_DATA_SCHEMA_GIARDIA=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_GIARDIA=vdi_control_dev_n
DB_CONNECTION_POOL_SIZE_GIARDIA=5

DB_CONNECTION_ENABLED_HOST=false
DB_CONNECTION_NAME_HOST=HostDB
DB_CONNECTION_LDAP_HOST=host063n
DB_CONNECTION_PASS_HOST=someDBPass
DB_CONNECTION_DATA_SCHEMA_HOST=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_HOST=vdi_control_dev_n
DB_CONNECTION_POOL_SIZE_HOST=5

DB_CONNECTION_ENABLED_MICROSPORIDIA=false
DB_CONNECTION_NAME_MICROSPORIDIA=MicrosporidiaDB
DB_CONNECTION_LDAP_MICROSPORIDIA=micr063n
DB_CONNECTION_PASS_MICROSPORIDIA=someDBPass
DB_CONNECTION_DATA_SCHEMA_MICROSPORIDIA=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_MICROSPORIDIA=vdi_control_dev_n
DB_CONNECTION_POOL_SIZE_MICROSPORIDIA=5

DB_CONNECTION_ENABLED_PIROPLASMA=false
DB_CONNECTION_NAME_PIROPLASMA=PiroplasmaDB
DB_CONNECTION_LDAP_PIROPLASMA=piro063n
DB_CONNECTION_PASS_PIROPLASMA=someDBPass
DB_CONNECTION_DATA_SCHEMA_PIROPLASMA=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_PIROPLASMA=vdi_control_dev_n
DB_CONNECTION_POOL_SIZE_PIROPLASMA=5

DB_CONNECTION_ENABLED_PLASMO=true
DB_CONNECTION_NAME_PLASMO=PlasmoDB
DB_CONNECTION_LDAP_PLASMO=plas063n
DB_CONNECTION_PASS_PLASMO=someDBPass
DB_CONNECTION_DATA_SCHEMA_PLASMO=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_PLASMO=vdi_control_dev_n
DB_CONNECTION_POOL_SIZE_PLASMO=5

DB_CONNECTION_ENABLED_TOXO=false
DB_CONNECTION_NAME_TOXO=ToxoDB
DB_CONNECTION_LDAP_TOXO=toxo063n
DB_CONNECTION_PASS_TOXO=someDBPass
DB_CONNECTION_DATA_SCHEMA_TOXO=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_TOXO=vdi_control_dev_n
DB_CONNECTION_POOL_SIZE_TOXO=5

DB_CONNECTION_ENABLED_TRICH=false
DB_CONNECTION_NAME_TRICH=TrichDB
DB_CONNECTION_LDAP_TRICH=tvag063n
DB_CONNECTION_PASS_TRICH=someDBPass
DB_CONNECTION_DATA_SCHEMA_TRICH=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_TRICH=vdi_control_dev_n
DB_CONNECTION_POOL_SIZE_TRICH=5

DB_CONNECTION_ENABLED_TRITRYP=false
DB_CONNECTION_NAME_TRITRYP=TriTrypDB
DB_CONNECTION_LDAP_TRITRYP=tryp063n
DB_CONNECTION_PASS_TRITRYP=someDBPass
DB_CONNECTION_DATA_SCHEMA_TRITRYP=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_TRITRYP=vdi_control_dev_n
DB_CONNECTION_POOL_SIZE_TRITRYP=5

DB_CONNECTION_ENABLED_VECTOR=false
DB_CONNECTION_NAME_VECTOR=VectorBase
DB_CONNECTION_LDAP_VECTOR=vect063n
DB_CONNECTION_PASS_VECTOR=someDBPass
DB_CONNECTION_DATA_SCHEMA_VECTOR=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_VECTOR=vdi_control_dev_n
DB_CONNECTION_POOL_SIZE_VECTOR=5

DB_CONNECTION_ENABLED_ORTHO=false
DB_CONNECTION_NAME_ORTHO=OrthoMCL
DB_CONNECTION_LDAP_ORTHO=orth063n
DB_CONNECTION_PASS_ORTHO=someDBPass
DB_CONNECTION_DATA_SCHEMA_ORTHO=vdi_datasets_dev_n
DB_CONNECTION_CONTROL_SCHEMA_ORTHO=vdi_control_dev_n
DB_CONNECTION_POOL_SIZE_ORTHO=5

DB_CONNECTION_ENABLED_CLINEPI=false
DB_CONNECTION_NAME_CLINEPI=ClinEpiDB
DB_CONNECTION_LDAP_CLINEPI=eda063n
DB_CONNECTION_PASS_CLINEPI=someDBPass
DB_CONNECTION_DATA_SCHEMA_CLINEPI=vdidatasetsclinepidevn
DB_CONNECTION_CONTROL_SCHEMA_CLINEPI=vdicontrolclinepidevn
DB_CONNECTION_POOL_SIZE_CLINEPI=5

DB_CONNECTION_ENABLED_MICROBIOME=false
DB_CONNECTION_NAME_MICROBIOME=MicrobiomeDB
DB_CONNECTION_LDAP_MICROBIOME=eda063n
DB_CONNECTION_PASS_MICROBIOME=someDBPass
DB_CONNECTION_DATA_SCHEMA_MICROBIOME=vdidatasetsmbiodevn
DB_CONNECTION_CONTROL_SCHEMA_MICROBIOME=vdicontrolmbiodevn
DB_CONNECTION_POOL_SIZE_MICROBIOME=5