From c6441bb7217e75d48b1b56a679890af8ae96ceab Mon Sep 17 00:00:00 2001
From: Herman De Beukelaer <herman.debeukelaer@psb.ugent.be>
Date: Wed, 27 Sep 2023 09:26:07 +0200
Subject: [PATCH] Fix second gene annotation

---
 workflows/miniac_gw.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/workflows/miniac_gw.nf b/workflows/miniac_gw.nf
index d8fe21f..7623465 100755
--- a/workflows/miniac_gw.nf
+++ b/workflows/miniac_gw.nf
@@ -118,7 +118,7 @@ process getNetwork {
    path "${acr_file_name}_network.txt"
 
    script:
-   ann_second_gene = second_gene_dist == true ? "--second_gene_dist ${second_gene_dist}" : ''
+   ann_second_gene = second_gene_annot == true ? "--second_gene_dist ${second_gene_dist}" : ''
    num_genes_annot = second_gene_annot == true ? "2" : '1'
 
    """