diff --git a/.github/workflows/docs_deploy.yml b/.github/workflows/docs_deploy.yml index 4678324..a8e18dc 100644 --- a/.github/workflows/docs_deploy.yml +++ b/.github/workflows/docs_deploy.yml @@ -38,18 +38,18 @@ jobs: source $(poetry env info --path)/bin/activate poetry install --with docs,test cd docs && rm -rf source/reference/api/_autosummary && make html - cd .. && coverage run -m pytest -m "not integration_test" && coverage xml && coverage report -m - - name: Upload coverage to Codecov - uses: Wandalen/wretry.action@v1.4.4 - with: - action: codecov/codecov-action@v4.0.1 - with: | - token: ${{ secrets.CODECOV_TOKEN }} - file: ./coverage.xml - name: codecov-umbrella - fail_ci_if_error: true - attempt_limit: 5 - attempt_delay: 30000 + # cd .. && coverage run -m pytest -m "not integration_test" && coverage xml && coverage report -m + # - name: Upload coverage to Codecov + # uses: Wandalen/wretry.action@v1.4.4 + # with: + # action: codecov/codecov-action@v4.0.1 + # with: | + # token: ${{ secrets.CODECOV_TOKEN }} + # file: ./coverage.xml + # name: codecov-umbrella + # fail_ci_if_error: true + # attempt_limit: 5 + # attempt_delay: 30000 - name: Deploy to Github pages uses: JamesIves/github-pages-deploy-action@v4.5.0 with: diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 19e192e..0a30801 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -1,6 +1,6 @@ -# Contributing to aieng-template +# Contributing to AtomGen -Thanks for your interest in contributing to the aieng-template! +Thanks for your interest in contributing to AtomGen! To submit PRs, please fill out the PR template along with the PR. If the PR fixes an issue, don't forget to link the PR to the issue! diff --git a/README.md b/README.md index 9054604..146f611 100644 --- a/README.md +++ b/README.md @@ -4,17 +4,17 @@ [![code checks](https://github.com/VectorInstitute/atomgen/actions/workflows/code_checks.yml/badge.svg)](https://github.com/VectorInstitute/atomgen/actions/workflows/code_checks.yml) [![integration tests](https://github.com/VectorInstitute/atomgen/actions/workflows/integration_tests.yml/badge.svg)](https://github.com/VectorInstitute/atomgen/actions/workflows/integration_tests.yml) [![docs](https://github.com/VectorInstitute/atomgen/actions/workflows/docs_deploy.yml/badge.svg)](https://github.com/VectorInstitute/atomgen/actions/workflows/docs_deploy.yml) -[![codecov](https://codecov.io/gh/VectorInstitute/atomgen/branch/main/graph/badge.svg)](https://codecov.io/gh/VectorInstitute/atomgen) -[![license](https://img.shields.io/github/license/VectorInstitute/atomgen.svg)](https://github.com/VectorInstitute/atomgen/blob/main/LICENSE) + +[![license](https://img.shields.io/github/license/VectorInstitute/cyclops.svg)](https://github.com/VectorInstitute/atomgen/blob/main/LICENSE) ## Table of Contents -- [Overview](#overview) +- [Introduction](#introduction) - [Datasets](#datasets) - [Models](#models) - [Tasks](#tasks) - [Installation](#installation) -- [Developing](#developing) +- [Developing](#🧑🏿‍💻-developing) ## Introduction