From e856dedcfe852aaba7e8e102a6b4b8349fd8493b Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 23 Dec 2024 21:31:50 +0000 Subject: [PATCH 1/5] [pre-commit.ci] pre-commit autoupdate MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit updates: - [github.com/pre-commit/mirrors-mypy: v1.13.0 → v1.14.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.13.0...v1.14.0) --- .pre-commit-config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 90c12c47c..ff437e30d 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -30,7 +30,7 @@ repos: - id: isort - repo: https://github.com/pre-commit/mirrors-mypy - rev: v1.13.0 + rev: v1.14.0 hooks: - id: mypy name: mypy From 5004357cbea49d2278cdb8f2ec4e20c49f8bc129 Mon Sep 17 00:00:00 2001 From: David Emerson Date: Mon, 6 Jan 2025 10:32:16 -0500 Subject: [PATCH 2/5] Upgrading peotry lock to include jinja update. This is needed to fix a vulnerability in that library --- poetry.lock | 6052 ++++++++++++++++++++++++------------------------ pyproject.toml | 2 +- 2 files changed, 3044 insertions(+), 3010 deletions(-) diff --git a/poetry.lock b/poetry.lock index e2c861984..3c2eddd34 100644 --- a/poetry.lock +++ b/poetry.lock @@ -13,12 +13,12 @@ files = [ [[package]] name = "acvl-utils" -version = "0.2" +version = "0.2.1" description = "Super cool utilities that we just love to use" optional = false python-versions = "*" files = [ - {file = "acvl_utils-0.2.tar.gz", hash = "sha256:d58636b5049b0ba698b6cbac27cdff9350458c40329555051083758c35e7da36"}, + {file = "acvl_utils-0.2.1.tar.gz", hash = "sha256:126d47dd841ac9347c51f9aa9a4d46734d04c8a0340771e8fdfc5c8d9fe7d7b5"}, ] [package.dependencies] @@ -31,113 +31,98 @@ torch = "*" [[package]] name = "aiohappyeyeballs" -version = "2.3.6" +version = "2.4.4" description = "Happy Eyeballs for asyncio" optional = false python-versions = ">=3.8" files = [ - {file = 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scikit-learn = "1.5.0" # Pin as it was causing issues with nnunet tornado = ">=6.4.2" [tool.poetry.group.dev.dependencies] -# locked the 2.13 version because of restrictions with tensorflow-io +# locked the 2.15 version because of restrictions with tensorflow-io # (see https://pypi.org/project/tensorflow-io/ section "TensorFlow Version Compatibility") tensorflow = "2.15" nltk = "^3.8.0" From e4ed736c2140647c88856c278394922abb3fdd08 Mon Sep 17 00:00:00 2001 From: David Emerson Date: Mon, 6 Jan 2025 10:49:41 -0500 Subject: [PATCH 3/5] Trying to fix a version issue with nnunet for the smoke tests --- poetry.lock | 14 +++++++------- pyproject.toml | 1 + 2 files changed, 8 insertions(+), 7 deletions(-) diff --git a/poetry.lock b/poetry.lock index 3c2eddd34..18d7c9139 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.5 and should not be changed by hand. [[package]] name = "absl-py" @@ -13,12 +13,12 @@ files = [ [[package]] name = "acvl-utils" -version = "0.2.1" +version = "0.2" description = "Super cool utilities that we just love to use" optional = false python-versions = "*" files = [ - {file = "acvl_utils-0.2.1.tar.gz", hash = "sha256:126d47dd841ac9347c51f9aa9a4d46734d04c8a0340771e8fdfc5c8d9fe7d7b5"}, + {file = "acvl_utils-0.2.tar.gz", hash = "sha256:d58636b5049b0ba698b6cbac27cdff9350458c40329555051083758c35e7da36"}, ] [package.dependencies] @@ -7735,13 +7735,13 @@ tutorials = ["matplotlib", "pandas", "tabulate", "torch"] [[package]] name = "trove-classifiers" -version = "2024.10.21.16" +version = "2025.1.6.15" description = "Canonical source for classifiers on PyPI (pypi.org)." optional = false python-versions = "*" files = [ - {file = "trove_classifiers-2024.10.21.16-py3-none-any.whl", hash = "sha256:0fb11f1e995a757807a8ef1c03829fbd4998d817319abcef1f33165750f103be"}, - {file = "trove_classifiers-2024.10.21.16.tar.gz", hash = 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clipping bound (even if we're evaluating) split_size = len(packed_parameters) - 1 model_parameters = packed_parameters[:split_size] - clipping_bound = float(packed_parameters[split_size:][0]) - return model_parameters, clipping_bound + clipping_bound = packed_parameters[split_size:][0] + return model_parameters, clipping_bound.item() class ParameterPackerAdaptiveConstraint(ParameterPacker[float]): diff --git a/poetry.lock b/poetry.lock index 18d7c9139..48376411f 100644 --- a/poetry.lock +++ b/poetry.lock @@ -13,12 +13,12 @@ files = [ [[package]] name = "acvl-utils" -version = "0.2" +version = "0.2.1" description = "Super cool utilities that we just love to use" optional = false python-versions = "*" files = [ - {file = "acvl_utils-0.2.tar.gz", hash = "sha256:d58636b5049b0ba698b6cbac27cdff9350458c40329555051083758c35e7da36"}, + {file = "acvl_utils-0.2.1.tar.gz", hash = "sha256:126d47dd841ac9347c51f9aa9a4d46734d04c8a0340771e8fdfc5c8d9fe7d7b5"}, ] [package.dependencies] @@ -393,6 +393,44 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monai = "^1.3.0" nnunetv2 = "^2.3.1" wandb = "^0.18.0" -blosc2 = "^2.7.1" +acvl_utils = "0.2" # Pin as it was causing an issue with nnunet (ModuleNotFoundError: No module named 'blosc2') scikit-learn = "1.5.0" # Pin as it was causing issues with nnunet # Problematic grpcio versions cause issues, should be fixed in next flwr update