Dockerfile.Binder430

FROM rocker/binder:4.3.0

# docker build -t rocker/mydvenv:4.3.0 -f Dockerfile.Binder430 .
# docker run --rm -ti -e JUPYTER_TOKEN=****** -e SHELL=/bin/bash -p 8888:8888 rocker/mydvenv:4.3.0

## Declares build arguments
ARG NB_USER
ARG NB_UID

COPY --chown=${NB_USER} . ${HOME}

ENV DEBIAN_FRONTEND=noninteractive
USER root
RUN echo "Checking for 'apt.txt'..." \
        ; if test -f "apt.txt" ; then \
        apt-get update --fix-missing > /dev/null\
        && xargs -a apt.txt apt-get install --yes \
        && apt-get clean > /dev/null \
        && rm -rf /var/lib/apt/lists/* \
        && wget -qO- \
          "https://yihui.org/tinytex/install-unx.sh" | \
          sh -s - --admin --no-path \
        && mv ~/.TinyTeX /opt/TinyTeX \
        && /opt/TinyTeX/bin/*/tlmgr path add \
        && tlmgr install metafont mfware inconsolata tex ae parskip listings pgf preview grfext \
        && tlmgr install standalone luatex85 pgfplots\
        && tlmgr path add \
        && chown -R root:staff /opt/TinyTeX \
        && chmod -R g+w /opt/TinyTeX \
        && chmod -R g+wx /opt/TinyTeX/bin \
        && sed -i 's/256MiB/2GiB/' /etc/ImageMagick-6/policy.xml \
    ; fi

RUN pip install --quiet --no-cache-dir \
    RISE \
    plotly \
    rpy2 \
    pandas \
    scipy \
    wordcloud \
    cufflinks \
    kaleido

USER ${NB_USER}

RUN echo "Cloning git repositories and files ..." \
    && git clone https://github.com/topepo/FES.git \
    && git clone https://github.com/clauswilke/dataviz.git \
    && wget -P ~/rugplotcmd -q \
    "https://raw.githubusercontent.com/rijksuniversiteit-groningen/docker-cds/master/dsmethods/rugplot/rugplots.R" \
    && chmod +x ~/rugplotcmd/rugplots.R \
    && echo "alias rugplot='~/rugplotcmd/rugplots.R'" >> ~/.bashrc

## Run and install.R script, if it exists.
RUN if [ -f install.R ]; then R --quiet -f install.R; fi