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Strand information in MAF files is ignored. #4

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wash opened this issue Mar 17, 2011 · 0 comments
Open

Strand information in MAF files is ignored. #4

wash opened this issue Mar 17, 2011 · 0 comments

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@wash
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wash commented Mar 17, 2011

The reference sequence is always interpreted to be in the "+" direction even though it might be "-" in the MAF input. The GTF output is not correct in this scenario.

In practice this should not be a problem, because the reference sequence in MAF files is usually in the plus direction.
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