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Emptying current queue failes, leading to endless submission of new jobs #8

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Vassyli opened this issue Dec 16, 2020 · 0 comments
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@Vassyli
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Vassyli commented Dec 16, 2020

echo -n "" > ../workflow/ligand-collections/current/${VF_QUEUE_NO}

There is an error in the above line. "Empty" gets saved to ../workflow/ligand-collection/current/${VF_QUEUE_NO}, which is not getting checked by template1.slurm.sh (and probably others, too). Instead, the actually existing file still contains a collection, which is why a new job is getting submitted - doing nothing.

This line should get replaced with:

            echo -n "" > ../workflow/ligand-collections/current/${VF_QUEUE_NO_1}/${VF_QUEUE_NO_2}/${VF_QUEUE_NO}
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