From ab035443870dcaeee23e4a90099ee420c89019e1 Mon Sep 17 00:00:00 2001
From: Julie Iskander <34782134+jIskCoder@users.noreply.github.com>
Date: Thu, 3 Oct 2024 10:31:33 +1000
Subject: [PATCH] Disable singularity

---
 nextflow.config | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/nextflow.config b/nextflow.config
index 02244b6..7bf730a 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -30,8 +30,9 @@ profiles {
         process.beforeScript   = 'echo $HOSTNAME'
     }
     apptainer {
-        apptainer.enabled   = true
-        docker.enabled        = false
+        apptainer.enabled       = true
+        singularity.enabled     = false
+        docker.enabled          = false
         singularity.pullTimeout = "3h"
         process {
             withLabel: 'BWAAlign|Samtools|Bcftools|Fastqc|Multiqc|RGridss|Rfilter|IndexDedup' {
@@ -41,6 +42,7 @@ profiles {
     }
     docker {
         docker.enabled        = true
+        apptainer.enabled     = false
         singularity.enabled   = false
         process {
             withLabel: 'BWAAlign|Samtools|Bcftools|Fastqc|Multiqc|RGridss|Rfilter|IndexDedup' {