From e1d2f427d00b80a56658ac1c08b33954b3922464 Mon Sep 17 00:00:00 2001 From: Laurent Savaete Date: Fri, 20 Oct 2023 17:11:39 +0200 Subject: [PATCH] Update dev tools config (#929) Use poetry and update docker configurations --- .dockerignore | 7 + .github/workflows/api.yml | 56 + .github/workflows/{build.yml => frontend.yml} | 46 +- README.md | 12 + alerting/package.json | 2 +- api/Dockerfile | 56 +- api/Makefile | 27 +- api/README.md | 19 +- api/app/auth.py | 10 +- api/app/report.py | 57 +- api/app/tests/conftest.py-template | 8 + api/app/tests/fixtures/prism_api_stats.json | 202 ++ api/app/tests/test_api.py | 6 +- api/app/tests/test_calculate.py | 4 + api/app/tests/test_playwright_renderer.py | 6 +- api/app/zonal_stats.py | 1 - api/docker-compose.test.yml | 21 + api/poetry.lock | 2930 +++++++++++++++++ api/pyproject.toml | 35 +- api/requirements.txt | 61 - api/utils/wait-for-it.sh | 177 + frontend/.firebaserc | 3 + frontend/Dockerfile | 22 + frontend/firebase.json | 6 + frontend/package.json | 1 + .../ExposureAnalysisActions/index.tsx | 7 +- 26 files changed, 3616 insertions(+), 166 deletions(-) create mode 100644 .dockerignore create mode 100644 .github/workflows/api.yml rename .github/workflows/{build.yml => frontend.yml} (79%) create mode 100644 api/app/tests/conftest.py-template create mode 100644 api/app/tests/fixtures/prism_api_stats.json create mode 100644 api/poetry.lock delete mode 100644 api/requirements.txt create mode 100755 api/utils/wait-for-it.sh create mode 100644 frontend/Dockerfile diff --git a/.dockerignore b/.dockerignore new file mode 100644 index 000000000..23f925fb1 --- /dev/null +++ b/.dockerignore @@ -0,0 +1,7 @@ +# this file is only used to build the frontend image +# NOT for the python api (see api/.dockerignore for that) +common/node_modules/** +frontend/node_modules/** +alerting/* +api/* +docs/* diff --git a/.github/workflows/api.yml b/.github/workflows/api.yml new file mode 100644 index 000000000..8b67ef6c0 --- /dev/null +++ b/.github/workflows/api.yml @@ -0,0 +1,56 @@ +# for comment on PR, follow instruction for: https://github.com/marketplace/actions/sticky-pull-request-comment +name: PRISM CI - API +on: + # Run on all pull requests and on pushes to master. + pull_request: + push: + branches: + - master + +jobs: + api_lint: + runs-on: ubuntu-latest + strategy: + matrix: + python-version: ["3.10"] + # run the matrix jobs one after the other, so they can benefit from caching + max-parallel: 1 + + steps: + - uses: actions/checkout@v4 + - name: Install Poetry + uses: snok/install-poetry@v1 + with: + # Version of Poetry to use + version: 1.6.1 + virtualenvs-create: true + virtualenvs-in-project: true + - name: Install dependencies + run: | + cd api + poetry install + if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' + - name: Check formatting with black and isort + run: | + cd api + poetry run black --check . + poetry run isort --check . + + api_build: + name: build and test api + runs-on: ubuntu-latest + steps: + - name: Checkout + uses: actions/checkout@v2 + - name: Install Docker Compose + run: | + DOCKER_CONFIG=${DOCKER_CONFIG:-$HOME/.docker} + mkdir -p $DOCKER_CONFIG/cli-plugins + curl -SL https://github.com/docker/compose/releases/download/v2.20.3/docker-compose-`uname -s`-`uname -m` -o $DOCKER_CONFIG/cli-plugins/docker-compose + chmod +x $DOCKER_CONFIG/cli-plugins/docker-compose + docker compose version + - name: Build containers + run: cd api && make build + - name: Run tests + run: cd api && make api-test + diff --git a/.github/workflows/build.yml b/.github/workflows/frontend.yml similarity index 79% rename from .github/workflows/build.yml rename to .github/workflows/frontend.yml index 2a62252e2..3de5cfcbd 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/frontend.yml @@ -1,5 +1,5 @@ # for comment on PR, follow instruction for: https://github.com/marketplace/actions/sticky-pull-request-comment -name: PRISM CI +name: PRISM CI - Frontend on: # Run on all pull requests and on pushes to master. pull_request: @@ -172,47 +172,3 @@ jobs: project: "frontend/build/." login: ${{ secrets.surge_login }} token: ${{ secrets.surge_token }} - - api_lint: - runs-on: ubuntu-latest - strategy: - matrix: - python-version: ["3.10"] - # run the matrix jobs one after the other, so they can benefit from caching - max-parallel: 1 - - steps: - - uses: actions/checkout@v2 - - name: Install Poetry - uses: snok/install-poetry@v1 - with: - # Version of Poetry to use - version: 1.4.2 - virtualenvs-create: true - virtualenvs-in-project: true - - name: Install dependencies - run: | - cd api - poetry install - if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' - - name: Check formatting with black and isort - run: | - cd api - poetry run black --check . - poetry run isort --check . - - api_build: - name: build api - runs-on: ubuntu-latest - steps: - - name: Checkout - uses: actions/checkout@v2 - - name: Install Docker Compose - run: | - curl -L https://github.com/docker/compose/releases/download/1.11.2/docker-compose-`uname -s`-`uname -m` > ~/docker-compose - chmod +x ~/docker-compose - sudo mv ~/docker-compose /usr/local/bin/docker-compose - - name: Build containers - run: cd api && docker-compose build api - - name: Run tests - run: cd api && make api-test diff --git a/README.md b/README.md index d8a200c15..3ccb38f6c 100644 --- a/README.md +++ b/README.md @@ -284,6 +284,18 @@ This project was bootstrapped with [Create React App](https://github.com/faceboo - **Mapping** Uses [MapLibre](https://maplibre.org/maplibre-gl-js-docs/api/). The app supports Maptiler and Mapbox styles. To use Mapbox styles, you will need to create a token and add it as `REACT_APP_MAPBOX_TOKEN` in a `.env` file at the root folder. Then specify your style url using `REACT_APP_DEFAULT_STYLE`. - **WFP authentication** Uses [msal](https://github.com/AzureAD/microsoft-authentication-library-for-js). You need to include within your .env file the variables `REACT_APP_OAUTH_CLIENT_ID`, `REACT_APP_OAUTH_AUTHORITY` and `REACT_APP_OAUTH_REDIRECT_URI`. Also, set the `WFPAuthRequired` flag within the country prism.json file +### Developing the frontend + +The following commands should get you a local development instance of the frontend: + +``` +cd frontend +yarn clean +yarn install +yarn setup:common +REACT_APP_COUNTRY=cambodia yarn start +``` + ### Available Scripts In the project directory, you can run: diff --git a/alerting/package.json b/alerting/package.json index 11e11683e..1f9916b8e 100644 --- a/alerting/package.json +++ b/alerting/package.json @@ -22,7 +22,7 @@ "migration:revert": "yarn typeorm migration:revert", "typeorm-seeding": "ts-node $(yarn bin typeorm-seeding)", "alert-worker": "yarn ts-node src/alert-worker.ts", - "docker-alert": "docker-compose run --entrypoint 'yarn alert-worker' alerting-node" + "docker-alert": "docker compose run --entrypoint 'yarn alert-worker' alerting-node" }, "dependencies": { "@turf/bbox": "^6.3.0", diff --git a/api/Dockerfile b/api/Dockerfile index ea59cdc4b..9866c4b21 100644 --- a/api/Dockerfile +++ b/api/Dockerfile @@ -1,21 +1,51 @@ -# only image with python 3.10 on it -# other GDAL images use python 3.8 -# This provides GDAL 3.6dev -FROM osgeo/gdal:ubuntu-small-latest +FROM ghcr.io/osgeo/gdal:ubuntu-full-3.7.0 -COPY ./app /app +ENV PYTHONPATH=/ -WORKDIR /app/ +ENV POETRY_VERSION=1.6.1 +# install poetry in this location +ENV POETRY_HOME="/opt/poetry" -ENV PYTHONPATH=/ +# do not ask any interactive question +ENV POETRY_NO_INTERACTION=1 +# set the cache location so we can mount docker buildx cache on it +ENV POETRY_CACHE_DIR=/root/.cache + +# set poetry to use the system python env so we get all +# the GDAL packages which are already installed. This goes +# against best practice, but follows the logic in place before +# the switch to poetry +ENV POETRY_VIRTUALENVS_CREATE=false + +ENV PATH="$POETRY_HOME/bin:$PATH" + +RUN --mount=type=cache,target=/root/.cache curl -sSL https://install.python-poetry.org | python3 - -COPY requirements.txt . +# COPY requirements.txt . +# copy pyproject so that black and isort use the right config +COPY pyproject.toml / -RUN apt update -RUN apt install -y python3-pip libpq-dev +COPY poetry.lock / + +RUN --mount=type=cache,target=/var/cache/apt \ + apt-get update && \ + apt-get --no-install-recommends install -y python3-pip libpq-dev curl python3-dev build-essential RUN pip install --upgrade pip -RUN pip install -r requirements.txt -RUN playwright install chromium -RUN playwright install-deps + +RUN --mount=type=cache,target=/root/.cache \ + poetry install + +# RUN --mount=type=cache,target=/root/.cache poetry run playwright install chromium +RUN poetry run playwright install chromium +# playwright installs a lot of apt packages +RUN --mount=type=cache,target=/root/.cache \ + --mount=type=cache,target=/var/lib/apt \ + --mount=type=cache,target=/var/cache/apt \ + poetry run playwright install-deps + +# keep this copy towards the end to help with caching previous layers +COPY ./app /app + +WORKDIR /app/ EXPOSE 80 diff --git a/api/Makefile b/api/Makefile index 30bfbba13..19ef82b81 100644 --- a/api/Makefile +++ b/api/Makefile @@ -1,34 +1,37 @@ build: - docker compose build api + docker compose -f docker-compose.yml -f docker-compose.test.yml build + docker compose -f docker-compose.yml -f docker-compose.test.yml pull api: - docker-compose -f docker-compose.yml -f docker-compose.develop.yml up + docker compose -f docker-compose.yml -f docker-compose.develop.yml up deploy: - docker-compose build && docker-compose -f docker-compose.yml -f docker-compose.deploy.yml up -d + docker compose build && docker-compose -f docker-compose.yml -f docker-compose.deploy.yml up -d logs: - docker-compose -f docker-compose.yml -f docker-compose.deploy.yml logs -f + docker compose -f docker-compose.yml -f docker-compose.deploy.yml logs -f api-lint: - docker-compose run --no-deps api bash -c "black ." - docker-compose run --no-deps api bash -c "isort ." + docker compose run --no-deps api bash -c "poetry run black ." + docker compose run --no-deps api bash -c "poetry run isort ." api-typecheck: - docker-compose run --no-deps api bash -c "mypy ." + docker compose run --no-deps api bash -c "mypy ." test-services: - docker-compose -f docker-compose.yml -f docker-compose.test.yml up -d + docker compose -f docker-compose.yml -f docker-compose.test.yml up -d api-test: test-services - docker-compose -f docker-compose.yml -f docker-compose.test.yml run api bash -c "pytest -s tests" + docker compose -f docker-compose.yml -f docker-compose.test.yml run api bash -c "../wait-for-it.sh frontend:3000 -t 180" + docker compose -f docker-compose.yml -f docker-compose.test.yml run api bash -c "pytest -s tests" + docker compose -f docker-compose.yml -f docker-compose.test.yml down api-add-users: - docker-compose -f docker-compose.yml -f docker-compose.develop.yml run api bash -c "python scripts/add_users.py" + docker compose -f docker-compose.yml -f docker-compose.develop.yml run api bash -c "python scripts/add_users.py" BACKEND_COVERAGE=pytest --cov=app --cov-config .coveragerc --cov-fail-under=30 --cov-report term-missing api-coverage: - docker-compose run --no-deps api ${BACKEND_COVERAGE} + docker compose run --no-deps api ${BACKEND_COVERAGE} # Run tests for all components. test: @@ -37,7 +40,7 @@ test: $(MAKE) api-coverage bash: - docker-compose -f docker-compose.yml -f docker-compose.develop.yml run api bash + docker compose -f docker-compose.yml -f docker-compose.develop.yml run api bash # [Dummy dependency to force a make command to always run.] FORCE: diff --git a/api/README.md b/api/README.md index bbdce7ea9..79a8d142c 100644 --- a/api/README.md +++ b/api/README.md @@ -73,7 +73,6 @@ Returns armed conflict incidents using ACLED api. Make sure to have the defined - `?fields`, Comma separated string which specifies the fields to be returned per incident. - `?event_date`, Return incidents only matching the given value with format YYYY-MM-DD - ### `/kobo/forms` (GET) Returns all form responses using Kobo API @@ -112,7 +111,7 @@ make api To run flask api together with database within same network, run: ``` -docker-compose -f ./docker-compose.develop.yml -f ../alerting/docker-compose.yml up +docker compose -f ./docker-compose.develop.yml -f ../alerting/docker-compose.yml up ``` ### Tests @@ -123,6 +122,22 @@ To run linting and tests, run: make test ``` +#### Debugging playwright tests + +To run python tests outside of docker, run "make localtests". This will set them up to run outside docker, so that +playwright can run in debug mode, with a visible browser. + +- start the frontend in docker with `make test-services`. +- in a shell (tested in bash only): + +```bash +cd api/app +mv tests/conftest.py-template tests/conftest.py +KOBO_USERNAME=ovio KOBO_PW=pwd PWDEBUG=1 poetry run pytest -s tests -k test_download_report +``` + +This should open playwright in debug mode, with a browser window and a debugging one. More info: https://playwright.dev/python/docs/debug + ## Deployments We are using [docs.traefik.io](https://docs.traefik.io/) diff --git a/api/app/auth.py b/api/app/auth.py index 7835715cb..4711aa8f4 100644 --- a/api/app/auth.py +++ b/api/app/auth.py @@ -3,6 +3,7 @@ import hashlib import logging import secrets +from typing import Annotated from app.database.database import AuthDataBase from app.database.user_info_model import UserInfoModel @@ -18,6 +19,11 @@ auth_db = AuthDataBase() if not auth_db.active: + # in local development, this condition might be true + # in which case the openapi introspection can generate + # strange results in the openapi.json output. + # eg. /kobo/forms might require a body in a GET request + # which is invalid. depends = lambda *_: True @@ -36,7 +42,9 @@ def verify_hash(password: str, saved_salt: str) -> bytes: return key -def validate_user(credentials: HTTPBasicCredentials = depends) -> UserInfoModel: +def validate_user( + credentials: Annotated[HTTPBasicCredentials, depends] +) -> UserInfoModel: """Validate user info.""" if not auth_db.active: return UserInfoModel(access={}) diff --git a/api/app/report.py b/api/app/report.py index bb04a379b..ae2d6d917 100644 --- a/api/app/report.py +++ b/api/app/report.py @@ -1,9 +1,11 @@ +import json import os from typing import Final, Optional from urllib.parse import parse_qs, urlparse +import pytest from app.caching import CACHE_DIRECTORY -from playwright.async_api import async_playwright +from playwright.async_api import async_playwright, expect # Html selectors LAYER_ACCORDION_SELECTOR: Final[ @@ -32,35 +34,64 @@ async def download_report( if os.path.exists(report_file_path): return report_file_path + async def mock_prism_api_stats_call(route): + with open("./tests/fixtures/prism_api_stats.json") as f: + j = json.load(f) + await route.fulfill(json=j) + async with async_playwright() as p: browser = await p.chromium.launch() page = await browser.new_page() + # mock the api call to avoid network issues in CI + await page.route("https://prism-api.ovio.org/stats", mock_prism_api_stats_call) + page.set_default_timeout(PAGE_TIMEOUT) await page.goto(url) - # Wait for page to be loaded - await page.wait_for_selector(LAYER_ACCORDION_SELECTOR, state="visible") + # make sure we're on the right tab + await page.get_by_role("tab", name="Layers").click() + + # expand the first main and first sub dropdowns + await page.get_by_role("button", name="Flood 2").click() + + await page.get_by_role("button", name="Flood Monitoring 1").click() + + # Enable flood extent buttons + flood_extent_checkbox = page.get_by_role("checkbox", name="Flood extent") + await expect(flood_extent_checkbox).to_be_visible(timeout=20_000) - # Toggle level one dropdowns - await toggle_every_visible_dropdown(page) + # the switch status is flaky (sometimes checked, sometimes not) + # so make sure we only check it if needed. This might mean there + # is a bug in the frontend code? + fec_checked = await flood_extent_checkbox.is_checked() + if not fec_checked: + flood_extent_checkbox.click() - # Toggle level two dropdowns - await toggle_every_visible_dropdown(page) + await expect(flood_extent_checkbox).to_be_checked(timeout=10_000) + await expect( + page.get_by_role("button", name="Exposure Analysis") + ).not_to_be_disabled() # Click on exposure analysis toggle button await click_target_exposure_analysis(page, layerIdParam) # Wait for page to be loaded on exposure analysis - await page.wait_for_selector(CREATE_REPORT_BUTTON_SELECTOR, state="visible") + await page.wait_for_selector('div[id="full-width-tabpanel-2"]', state="visible") - # Change language if not english - await change_language_if_not_default(page, language) + await page.wait_for_selector( + 'div[class="memo-analysisButtonContainer-140"]', state="visible" + ) - # Click on the pdf-renderer preview report button - await click_create_report_button(page) + await page.wait_for_selector(CREATE_REPORT_BUTTON_SELECTOR, state="attached") - # Wait for report to be created by pdf-renderer + # # Change language if not english + await change_language_if_not_default(page, language) + # + # # Click on the pdf-renderer preview report button + await click_create_report_button(page) + # + # # Wait for report to be created by pdf-renderer await page.wait_for_selector(DOWNLOAD_BUTTON_SELECTOR) # Download file on disk diff --git a/api/app/tests/conftest.py-template b/api/app/tests/conftest.py-template new file mode 100644 index 000000000..73c87bd08 --- /dev/null +++ b/api/app/tests/conftest.py-template @@ -0,0 +1,8 @@ +import sys +from pathlib import Path + +# This is only useful to run tests outside docker, mostly +# for debugging of playwright tests. +# See README under "Debugging playwright tests" for details. + +sys.path.insert(0, str(Path(__file__).resolve().parent.parent.parent)) diff --git 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"coordinates": [ [ [ 106.74714638, 14.322060707 ], [ 106.752856432, 14.377797728 ], [ 106.755238242, 14.383758683 ], [ 106.7559727, 14.386534663 ] ] ] + } + } +] diff --git a/api/app/tests/test_api.py b/api/app/tests/test_api.py index 5fd3c188a..64a545b0f 100644 --- a/api/app/tests/test_api.py +++ b/api/app/tests/test_api.py @@ -47,7 +47,7 @@ def migrate_test_db(): @pytest.fixture(scope="session", autouse=True) -def add_test_users(): +def add_test_users(migrate_test_db): # noqa: F811 add_users() @@ -149,7 +149,7 @@ def test_stats_endpoint2(): "/stats", headers={"Accept": "application/json"}, json={ - "geotiff_url": "https://api.earthobservation.vam.wfp.org/ows/?service=WCS&request=GetCoverage&version=1.0.0&coverage=hfs1_sfw_mask_mmr&crs=EPSG%3A4326&bbox=92.2%2C9.7%2C101.2%2C28.5&width=1098&height=2304&format=GeoTIFF&time=2022-08-12", + "geotiff_url": "https://api.earthobservation.vam.wfp.org/ows/?service=WCS&request=GetCoverage&version=1.0.0&coverage=hf_water_mmr&crs=EPSG%3A4326&bbox=92.2%2C9.7%2C101.2%2C28.5&width=1098&height=2304&format=GeoTIFF&time=2022-08-11", "zones_url": "https://prism-admin-boundaries.s3.us-east-2.amazonaws.com/mmr_admin_boundaries.json", "group_by": "TS", "geojson_out": False, @@ -168,7 +168,7 @@ def test_stats_endpoint_masked(): json={ "geotiff_url": "https://api.earthobservation.vam.wfp.org/ows/?service=WCS&request=GetCoverage&version=2.0.0&coverageId=wp_pop_cicunadj&subset=Long(95.71,96.68)&subset=Lat(19.42,20.33)", "zones_url": "https://prism-admin-boundaries.s3.us-east-2.amazonaws.com/mmr_admin_boundaries.json", - "mask_url": "https://api.earthobservation.vam.wfp.org/ows/?service=WCS&request=GetCoverage&version=1.0.0&coverage=hfs1_sfw_mask_mmr&crs=EPSG%3A4326&bbox=92.2%2C9.7%2C101.2%2C28.5&width=1098&height=2304&format=GeoTIFF&time=2022-08-22", + "mask_url": "https://api.earthobservation.vam.wfp.org/ows/?service=WCS&request=GetCoverage&version=1.0.0&coverage=hf_water_mmr&crs=EPSG%3A4326&bbox=92.2%2C9.7%2C101.2%2C28.5&width=1098&height=2304&format=GeoTIFF&time=2022-08-11", "group_by": "TS_PCODE", "geojson_out": True, }, diff --git a/api/app/tests/test_calculate.py b/api/app/tests/test_calculate.py index 822da086f..72d6a235a 100644 --- a/api/app/tests/test_calculate.py +++ b/api/app/tests/test_calculate.py @@ -24,6 +24,10 @@ def test_calculate_stats_geojson_output(): geotiff = "/app/tests/raster_sample.tif" features = calculate_stats(zones, geotiff, geojson_out=True) assert len(features) == 26 + # This breaks with Fiona >= 1.9 because it does not return + # dicts anymore, but immutable classes + # https://fiona.readthedocs.io/en/stable/manual.html#features + # and https://github.com/perrygeo/python-rasterstats/issues/274 assert features[0]["type"] == "Feature" diff --git a/api/app/tests/test_playwright_renderer.py b/api/app/tests/test_playwright_renderer.py index 97a58aff8..d20c7c94e 100644 --- a/api/app/tests/test_playwright_renderer.py +++ b/api/app/tests/test_playwright_renderer.py @@ -22,7 +22,7 @@ async def test_download_report(): # Act report_path: str = await download_report( - "https://prism-900.surge.sh/?hazardLayerIds=flood_extent%2Cews_remote&date=2023-07-07", + "http://frontend:3000/?hazardLayerIds=flood_extent%2Cews_remote&date=2023-07-07", "flood_extent", "cambodia", "en", @@ -49,12 +49,12 @@ async def test_should_load_report_from_cache_if_present(playwright_mock): # Act report_path: str = await download_report( - "https://prism-900.surge.sh/?hazardLayerIds=flood_extent&date=2023-07-07", + "http://frontend:3000/?hazardLayerIds=flood_extent&date=2023-07-07", "flood_extent", "cambodia", "en", ) - # Arrange + # Assert assert report_path == EXPECTED_REPORT_FILEPATH playwright_mock.assert_not_called() diff --git a/api/app/zonal_stats.py b/api/app/zonal_stats.py index afe9d6bb6..cff541782 100644 --- a/api/app/zonal_stats.py +++ b/api/app/zonal_stats.py @@ -22,7 +22,6 @@ from app.timer import timed from app.validation import VALID_OPERATORS from fastapi import HTTPException -from osgeo import gdal from rasterio.warp import Resampling from rasterstats import zonal_stats # type: ignore from shapely.geometry import mapping, shape # type: ignore diff --git a/api/docker-compose.test.yml b/api/docker-compose.test.yml index d1858a43b..9371d5a43 100644 --- a/api/docker-compose.test.yml +++ b/api/docker-compose.test.yml @@ -6,6 +6,7 @@ services: api: volumes: - ./app:/app + - ./utils/wait-for-it.sh:/wait-for-it.sh environment: - "RUN=uvicorn app.main:app --host 0.0.0.0 --port 80" - POSTGRES_HOST=testdb @@ -26,3 +27,23 @@ services: - POSTGRES_DB=postgres - POSTGRES_PORT=5432 - POSTGRES_PASSWORD=!ChangeMe! + + frontend: + # small wrapper around the frontend code to make it easier to run + # python tests against it + build: + context: .. + dockerfile: 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hash = "sha256:84e64a1c28cf7e91ed2078bb8cc8c259cb19b76942096c8d7b84947690cabaf0"}, +] + +[package.extras] +docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"] +testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"] + +[metadata] +lock-version = "2.0" +python-versions = "<3.11,>=3.8.0" +content-hash = "e636cf23f6e1eb78d3304ab97deeeea0c8b78b7414e0367ff9a634b01e1418d0" diff --git a/api/pyproject.toml b/api/pyproject.toml index b8b7cba0a..4b2bb6811 100644 --- a/api/pyproject.toml +++ b/api/pyproject.toml @@ -7,17 +7,36 @@ license = "Apache 2.0" [tool.poetry.dependencies] PyJWT = "2.4.0" -python = "<3.11,>=3.7.2" +python = "<3.11,>=3.8.0" requests = "^2.25.1" +playwright = "1.38.0" +fastapi = "^0.103.2" +schemathesis = "^3.19.7" +uvicorn = { extras = ["standard"], version = "^0.23.2" } +sqlalchemy = "^1.4.40" +rasterio = "^1.3.8" +pydantic = { version = "1.9.2", extras = ["email"] } +python-dateutil = "2.8.2" +types-python-dateutil = "2.8.19" +psycopg2 = "^2.9.9" +rasterstats = "0.18.0" +boto3 = "^1.28.61" +cachetools = "^5.3.1" +odc-geo = "^0.4.1" +odc-stac = "^0.3.6" +pystac-client = "^0.7.5" +pystac = "^1.8.4" +pytest-asyncio = "^0.21.1" +pytest-playwright = "^0.4.3" -[tool.poetry.dev-dependencies] -black = "^22.6.0" -isort = "^5.10.1" +[tool.poetry.group.dev.dependencies] +black = "^23.9.0" +isort = "^5.12.0" +mypy = "^1.5.1" +pytest = "^7.4.2" [[tool.mypy.overrides]] -module = [ - "backoff", -] +module = ["backoff"] ignore_missing_imports = true [tool.black] @@ -25,7 +44,7 @@ line-length = 88 [tool.isort] profile = "black" -multi_line_output = 3 # Vertical Hanging Indent +multi_line_output = 3 # Vertical Hanging Indent src_paths = "prism-app/api" [build-system] diff --git a/api/requirements.txt b/api/requirements.txt deleted file mode 100644 index 1e367f5ac..000000000 --- a/api/requirements.txt +++ /dev/null @@ -1,61 +0,0 @@ -certifi==2023.5.7 -charset-normalizer==3.2.0 -exceptiongroup==1.1.2 -greenlet==2.0.2 -idna==3.4 -iniconfig==2.0.0 -packaging==23.1 -playwright==1.35.0 -pluggy==1.2.0 -py==1.11.0 -boto3==1.26.26 -cachetools==5.2.0 -fastapi==0.95.2 -Fiona==1.8.22 -gunicorn==20.1.0 -odc-geo==0.3.2 -odc-stac==0.3.6 -pystac-client==0.7.2 -pystac==1.8.1 -rasterstats==0.17.0 -requests==2.31.0 -Shapely==1.8.2 -uvicorn[standard]==0.18.2 -# Used by `make test` only: -mock==4.0.3 -# to get email validation -pydantic[email]==1.9.2 -pytest-cov==3.0.0 -schemathesis==3.19.5 -psycopg2==2.9.3 -sqlalchemy==1.4.40 -sqlalchemy2-stubs==0.0.2a25 -python-dateutil==2.8.2 -# Used by `make lint` only: -black==22.6.0 -isort==5.10.1 -mypy==0.971 -pydocstyle==6.1.1 -pyee==9.0.4 -pyparsing==3.1.0 -pyrsistent==0.19.3 -pytest==7.4.0 -pytest-base-url==2.0.0 -pytest-playwright==0.3.3 -python-dotenv==1.0.0 -python-slugify==8.0.1 -pytz==2023.3 -PyYAML==6.0 -requests==2.31.0 -six==1.16.0 -sniffio==1.3.0 -snowballstemmer==2.2.0 -text-unidecode==1.3 -tomli==2.0.1 -tomli_w==1.0.0 -types-python-dateutil==2.8.19 -types-requests==2.28.8 -types-urllib3==1.26.25.13 -typing_extensions==4.7.1 -urllib3==1.26.16 -pytest-asyncio==0.21.1 \ No newline at end of file diff --git a/api/utils/wait-for-it.sh b/api/utils/wait-for-it.sh new file mode 100755 index 000000000..f3fb47f2e --- /dev/null +++ b/api/utils/wait-for-it.sh @@ -0,0 +1,177 @@ +#!/usr/bin/env bash +# Use this script to test if a given TCP host/port are available + +WAITFORIT_cmdname=${0##*/} + +echoerr() { if [[ $WAITFORIT_QUIET -ne 1 ]]; then echo "$@" 1>&2; fi } + +usage() +{ + cat << USAGE >&2 +Usage: + $WAITFORIT_cmdname host:port [-s] [-t timeout] [-- command args] + -h HOST | --host=HOST Host or IP under test + -p PORT | --port=PORT TCP port under test + Alternatively, you specify the host and port as host:port + -s | --strict Only execute subcommand if the test succeeds + -q | --quiet Don't output any status messages + -t TIMEOUT | --timeout=TIMEOUT + Timeout in seconds, zero for no timeout + -- COMMAND ARGS Execute command with args after the test finishes +USAGE + exit 1 +} + +wait_for() +{ + if [[ $WAITFORIT_TIMEOUT -gt 0 ]]; then + echoerr "$WAITFORIT_cmdname: waiting $WAITFORIT_TIMEOUT seconds for $WAITFORIT_HOST:$WAITFORIT_PORT" + else + echoerr "$WAITFORIT_cmdname: waiting for $WAITFORIT_HOST:$WAITFORIT_PORT without a timeout" + fi + WAITFORIT_start_ts=$(date +%s) + while : + do + curl --output /dev/null --silent --head --fail $WAITFORIT_HOST:$WAITFORIT_PORT + WAITFORIT_result=$? + if [[ $WAITFORIT_result -eq 0 ]]; then + WAITFORIT_end_ts=$(date +%s) + echoerr "$WAITFORIT_cmdname: $WAITFORIT_HOST:$WAITFORIT_PORT is available after $((WAITFORIT_end_ts - WAITFORIT_start_ts)) seconds" + break + fi + sleep 1 + done + return $WAITFORIT_result +} + +wait_for_wrapper() +{ + # In order to support SIGINT during timeout: http://unix.stackexchange.com/a/57692 + if [[ $WAITFORIT_QUIET -eq 1 ]]; then + timeout $WAITFORIT_BUSYTIMEFLAG $WAITFORIT_TIMEOUT $0 --quiet --child --host=$WAITFORIT_HOST --port=$WAITFORIT_PORT --timeout=$WAITFORIT_TIMEOUT & + else + timeout $WAITFORIT_BUSYTIMEFLAG $WAITFORIT_TIMEOUT $0 --child --host=$WAITFORIT_HOST --port=$WAITFORIT_PORT --timeout=$WAITFORIT_TIMEOUT & + fi + WAITFORIT_PID=$! + trap "kill -INT -$WAITFORIT_PID" INT + wait $WAITFORIT_PID + WAITFORIT_RESULT=$? + if [[ $WAITFORIT_RESULT -ne 0 ]]; then + echoerr "$WAITFORIT_cmdname: timeout occurred after waiting $WAITFORIT_TIMEOUT seconds for $WAITFORIT_HOST:$WAITFORIT_PORT" + fi + return $WAITFORIT_RESULT +} + +# process arguments +while [[ $# -gt 0 ]] +do + case "$1" in + *:* ) + WAITFORIT_hostport=(${1//:/ }) + WAITFORIT_HOST=${WAITFORIT_hostport[0]} + WAITFORIT_PORT=${WAITFORIT_hostport[1]} + shift 1 + ;; + --child) + WAITFORIT_CHILD=1 + shift 1 + ;; + -q | --quiet) + WAITFORIT_QUIET=1 + shift 1 + ;; + -s | --strict) + WAITFORIT_STRICT=1 + shift 1 + ;; + -h) + WAITFORIT_HOST="$2" + if [[ $WAITFORIT_HOST == "" ]]; then break; fi + shift 2 + ;; + --host=*) + WAITFORIT_HOST="${1#*=}" + shift 1 + ;; + -p) + WAITFORIT_PORT="$2" + if [[ $WAITFORIT_PORT == "" ]]; then break; fi + shift 2 + ;; + --port=*) + WAITFORIT_PORT="${1#*=}" + shift 1 + ;; + -t) + WAITFORIT_TIMEOUT="$2" + if [[ $WAITFORIT_TIMEOUT == "" ]]; then break; fi + shift 2 + ;; + --timeout=*) + WAITFORIT_TIMEOUT="${1#*=}" + shift 1 + ;; + --) + shift + WAITFORIT_CLI=("$@") + break + ;; + --help) + usage + ;; + *) + echoerr "Unknown argument: $1" + usage + ;; + esac +done + +if [[ "$WAITFORIT_HOST" == "" || "$WAITFORIT_PORT" == "" ]]; then + echoerr "Error: you need to provide a host and port to test." + usage +fi + +WAITFORIT_TIMEOUT=${WAITFORIT_TIMEOUT:-15} +WAITFORIT_STRICT=${WAITFORIT_STRICT:-0} +WAITFORIT_CHILD=${WAITFORIT_CHILD:-0} +WAITFORIT_QUIET=${WAITFORIT_QUIET:-0} + +# Check to see if timeout is from busybox? +WAITFORIT_TIMEOUT_PATH=$(type -p timeout) +WAITFORIT_TIMEOUT_PATH=$(realpath $WAITFORIT_TIMEOUT_PATH 2>/dev/null || readlink -f $WAITFORIT_TIMEOUT_PATH) + +WAITFORIT_BUSYTIMEFLAG="" +if [[ $WAITFORIT_TIMEOUT_PATH =~ "busybox" ]]; then + WAITFORIT_ISBUSY=1 + # Check if busybox timeout uses -t flag + # (recent Alpine versions don't support -t anymore) + if timeout &>/dev/stdout | grep -q -e '-t '; then + WAITFORIT_BUSYTIMEFLAG="-t" + fi +else + WAITFORIT_ISBUSY=0 +fi + +if [[ $WAITFORIT_CHILD -gt 0 ]]; then + wait_for + WAITFORIT_RESULT=$? + exit $WAITFORIT_RESULT +else + if [[ $WAITFORIT_TIMEOUT -gt 0 ]]; then + wait_for_wrapper + WAITFORIT_RESULT=$? + else + wait_for + WAITFORIT_RESULT=$? + fi +fi + +if [[ $WAITFORIT_CLI != "" ]]; then + if [[ $WAITFORIT_RESULT -ne 0 && $WAITFORIT_STRICT -eq 1 ]]; then + echoerr "$WAITFORIT_cmdname: strict mode, refusing to execute subprocess" + exit $WAITFORIT_RESULT + fi + exec "${WAITFORIT_CLI[@]}" +else + exit $WAITFORIT_RESULT +fi diff --git a/frontend/.firebaserc b/frontend/.firebaserc index 9cdc272b5..085fb06e0 100644 --- a/frontend/.firebaserc +++ b/frontend/.firebaserc @@ -10,6 +10,9 @@ ], "prism-mng": [ "prism-mng" + ], + "prism-khm": [ + "prism-khm" ] } } diff --git a/frontend/Dockerfile b/frontend/Dockerfile new file mode 100644 index 000000000..37ff8db9e --- /dev/null +++ b/frontend/Dockerfile @@ -0,0 +1,22 @@ +# A small image around the frontend code +# that makes it easier to run python tests +# against the frontend using playwright +FROM node:16-bookworm + +# copy dependencies definitions for better caching +WORKDIR /common/ + +COPY ./common ./ + +WORKDIR /frontend/ +COPY frontend/package.json ./ + +COPY frontend/yarn.lock ./ + +RUN yarn install --frozen-lockfile && yarn setup:common +RUN yarn global add cross-env + +# copy the rest of the source code +COPY ./frontend . + +EXPOSE 3000 diff --git a/frontend/firebase.json b/frontend/firebase.json index f6385f46b..3a20881ee 100644 --- a/frontend/firebase.json +++ b/frontend/firebase.json @@ -17,6 +17,12 @@ "public": "build", "ignore": ["firebase.json", "**/.*", "**/node_modules/**"], "rewrites": [{ "source": "**", "destination": "/index.html" }] + }, + { + "target": "prism-khm", + "public": "build", + "ignore": ["firebase.json", "**/.*", "**/node_modules/**"], + "rewrites": [{ "source": "**", "destination": "/index.html" }] } ] } diff --git a/frontend/package.json b/frontend/package.json index 320aaec53..b10313263 100644 --- a/frontend/package.json +++ b/frontend/package.json @@ -15,6 +15,7 @@ ] }, "scripts": { + "clean": "rimraf ./node_modules && pushd ../common && rimraf ./node_modules && popd", "start": "cross-env EXTEND_ESLINT=true react-scripts start", "analyze": "yarn build && npx source-map-explorer 'build/static/js/*.js'", "build": "cross-env EXTEND_ESLINT=true react-app-rewired build", diff --git a/frontend/src/components/MapView/LeftPanel/AnalysisPanel/ExposureAnalysisActions/index.tsx b/frontend/src/components/MapView/LeftPanel/AnalysisPanel/ExposureAnalysisActions/index.tsx index cbe8bf6d5..a9885ce2d 100644 --- a/frontend/src/components/MapView/LeftPanel/AnalysisPanel/ExposureAnalysisActions/index.tsx +++ b/frontend/src/components/MapView/LeftPanel/AnalysisPanel/ExposureAnalysisActions/index.tsx @@ -142,14 +142,15 @@ function ExposureAnalysisActions({ {t('Download as CSV')} )} - {/* Hide the preview report button for now. Report creation happens in the backend and is cached. */} - {/* */} +