From 719294d3509539c49c64a96054058db92d49b96b Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Laurent=20Sava=C3=ABte?= Date: Wed, 4 Oct 2023 13:25:04 +0200 Subject: [PATCH 01/57] Update to new docker compose command Docker compose v1 reached end of life in July. The new command format should be used now. See https://docs.docker.com/compose/migrate/ for details. --- .github/workflows/build.yml | 10 ++++++---- alerting/package.json | 2 +- api/Makefile | 22 +++++++++++----------- api/README.md | 3 +-- 4 files changed, 19 insertions(+), 18 deletions(-) diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index 2a62252e2..c82ed3f96 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -209,10 +209,12 @@ jobs: uses: actions/checkout@v2 - name: Install Docker Compose run: | - curl -L https://github.com/docker/compose/releases/download/1.11.2/docker-compose-`uname -s`-`uname -m` > ~/docker-compose - chmod +x ~/docker-compose - sudo mv ~/docker-compose /usr/local/bin/docker-compose + DOCKER_CONFIG=${DOCKER_CONFIG:-$HOME/.docker} + mkdir -p $DOCKER_CONFIG/cli-plugins + curl -SL https://github.com/docker/compose/releases/download/v2.20.3/docker-compose-`uname -s`-`uname -m` -o $DOCKER_CONFIG/cli-plugins/docker-compose + chmod +x $DOCKER_CONFIG/cli-plugins/docker-compose + docker compose version - name: Build containers - run: cd api && docker-compose build api + run: cd api && docker compose build api - name: Run tests run: cd api && make api-test diff --git a/alerting/package.json b/alerting/package.json index 11e11683e..1f9916b8e 100644 --- a/alerting/package.json +++ b/alerting/package.json @@ -22,7 +22,7 @@ "migration:revert": "yarn typeorm migration:revert", "typeorm-seeding": "ts-node $(yarn bin typeorm-seeding)", "alert-worker": "yarn ts-node src/alert-worker.ts", - "docker-alert": "docker-compose run --entrypoint 'yarn alert-worker' alerting-node" + "docker-alert": "docker compose run --entrypoint 'yarn alert-worker' alerting-node" }, "dependencies": { "@turf/bbox": "^6.3.0", diff --git a/api/Makefile b/api/Makefile index 30bfbba13..5bbb3bcb6 100644 --- a/api/Makefile +++ b/api/Makefile @@ -2,33 +2,33 @@ build: docker compose build api api: - docker-compose -f docker-compose.yml -f docker-compose.develop.yml up + docker compose -f docker-compose.yml -f docker-compose.develop.yml up deploy: - docker-compose build && docker-compose -f docker-compose.yml -f docker-compose.deploy.yml up -d + docker compose build && docker-compose -f docker-compose.yml -f docker-compose.deploy.yml up -d logs: - docker-compose -f docker-compose.yml -f docker-compose.deploy.yml logs -f + docker compose -f docker-compose.yml -f docker-compose.deploy.yml logs -f api-lint: - docker-compose run --no-deps api bash -c "black ." - docker-compose run --no-deps api bash -c "isort ." + docker compose run --no-deps api bash -c "black ." + docker compose run --no-deps api bash -c "isort ." api-typecheck: - docker-compose run --no-deps api bash -c "mypy ." + docker compose run --no-deps api bash -c "mypy ." test-services: - docker-compose -f docker-compose.yml -f docker-compose.test.yml up -d + docker compose -f docker-compose.yml -f docker-compose.test.yml up -d api-test: test-services - docker-compose -f docker-compose.yml -f docker-compose.test.yml run api bash -c "pytest -s tests" + docker compose -f docker-compose.yml -f docker-compose.test.yml run api bash -c "pytest -s tests" api-add-users: - docker-compose -f docker-compose.yml -f docker-compose.develop.yml run api bash -c "python scripts/add_users.py" + docker compose -f docker-compose.yml -f docker-compose.develop.yml run api bash -c "python scripts/add_users.py" BACKEND_COVERAGE=pytest --cov=app --cov-config .coveragerc --cov-fail-under=30 --cov-report term-missing api-coverage: - docker-compose run --no-deps api ${BACKEND_COVERAGE} + docker compose run --no-deps api ${BACKEND_COVERAGE} # Run tests for all components. test: @@ -37,7 +37,7 @@ test: $(MAKE) api-coverage bash: - docker-compose -f docker-compose.yml -f docker-compose.develop.yml run api bash + docker compose -f docker-compose.yml -f docker-compose.develop.yml run api bash # [Dummy dependency to force a make command to always run.] FORCE: diff --git a/api/README.md b/api/README.md index bbdce7ea9..33c22d8ae 100644 --- a/api/README.md +++ b/api/README.md @@ -73,7 +73,6 @@ Returns armed conflict incidents using ACLED api. Make sure to have the defined - `?fields`, Comma separated string which specifies the fields to be returned per incident. - `?event_date`, Return incidents only matching the given value with format YYYY-MM-DD - ### `/kobo/forms` (GET) Returns all form responses using Kobo API @@ -112,7 +111,7 @@ make api To run flask api together with database within same network, run: ``` -docker-compose -f ./docker-compose.develop.yml -f ../alerting/docker-compose.yml up +docker compose -f ./docker-compose.develop.yml -f ../alerting/docker-compose.yml up ``` ### Tests From 45fa6fd4fbf3f92c5f788f238f6f760c2b84246b Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Laurent=20Sava=C3=ABte?= Date: Wed, 4 Oct 2023 16:02:51 +0200 Subject: [PATCH 02/57] Copy pyproject.toml to docker image so black/isort use correct config --- api/Dockerfile | 2 ++ 1 file changed, 2 insertions(+) diff --git a/api/Dockerfile b/api/Dockerfile index ea59cdc4b..f4772dc6b 100644 --- a/api/Dockerfile +++ b/api/Dockerfile @@ -10,6 +10,8 @@ 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"tomli-2.0.1.tar.gz", hash = "sha256:de526c12914f0c550d15924c62d72abc48d6fe7364aa87328337a31007fe8a4f"}, +] + +[[package]] +name = "typing-extensions" +version = "4.8.0" +description = "Backported and Experimental Type Hints for Python 3.8+" +optional = false +python-versions = ">=3.8" +files = [ + {file = "typing_extensions-4.8.0-py3-none-any.whl", hash = "sha256:8f92fc8806f9a6b641eaa5318da32b44d401efaac0f6678c9bc448ba3605faa0"}, + {file = "typing_extensions-4.8.0.tar.gz", hash = "sha256:df8e4339e9cb77357558cbdbceca33c303714cf861d1eef15e1070055ae8b7ef"}, +] + +[[package]] +name = "urllib3" +version = "2.0.6" +description = "HTTP library with thread-safe connection pooling, file post, and more." +optional = false +python-versions = ">=3.7" +files = [ + {file = "urllib3-2.0.6-py3-none-any.whl", hash = "sha256:7a7c7003b000adf9e7ca2a377c9688bbc54ed41b985789ed576570342a375cd2"}, + {file = "urllib3-2.0.6.tar.gz", hash = "sha256:b19e1a85d206b56d7df1d5e683df4a7725252a964e3993648dd0fb5a1c157564"}, +] + +[package.extras] +brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"] +secure = ["certifi", "cryptography (>=1.9)", "idna (>=2.0.0)", "pyopenssl (>=17.1.0)", "urllib3-secure-extra"] +socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"] +zstd = ["zstandard (>=0.18.0)"] + +[metadata] +lock-version = "2.0" +python-versions = "<3.11,>=3.8.0" +content-hash = "4547f26fc6f20e41b5c1db72cd5d2d183fe6224c0c3bcc480bd8bb2bedafff1c" diff --git a/api/pyproject.toml b/api/pyproject.toml index b8b7cba0a..2dc801ebe 100644 --- a/api/pyproject.toml +++ b/api/pyproject.toml @@ -7,12 +7,12 @@ license = "Apache 2.0" [tool.poetry.dependencies] PyJWT = "2.4.0" -python = "<3.11,>=3.7.2" +python = "<3.11,>=3.8.0" requests = "^2.25.1" [tool.poetry.dev-dependencies] -black = "^22.6.0" -isort = "^5.10.1" +black = "^23.9.0" +isort = "^5.12.0" [[tool.mypy.overrides]] module = [ From e74ec362e2c21056716bdd2581e41c86d45f2b2c Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Laurent=20Sava=C3=ABte?= Date: Wed, 4 Oct 2023 17:41:03 +0200 Subject: [PATCH 04/57] Update to latest poetry in CI --- .github/workflows/build.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index c82ed3f96..3d26aa2a7 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -187,7 +187,7 @@ jobs: uses: snok/install-poetry@v1 with: # Version of Poetry to use - version: 1.4.2 + version: 1.6.1 virtualenvs-create: true virtualenvs-in-project: true - name: Install dependencies From a2b748fdbfd8cac2aa1e92bea1fb99532172ac78 Mon Sep 17 00:00:00 2001 From: Eric Boucher Date: Fri, 6 Oct 2023 16:46:28 +0200 Subject: [PATCH 05/57] Add prism-khm to firebase config --- frontend/.firebaserc | 3 +++ frontend/firebase.json | 6 ++++++ 2 files changed, 9 insertions(+) diff --git a/frontend/.firebaserc b/frontend/.firebaserc index 9cdc272b5..085fb06e0 100644 --- a/frontend/.firebaserc +++ b/frontend/.firebaserc @@ -10,6 +10,9 @@ ], "prism-mng": [ "prism-mng" + ], + "prism-khm": [ + "prism-khm" ] } } diff --git a/frontend/firebase.json b/frontend/firebase.json index f6385f46b..3a20881ee 100644 --- a/frontend/firebase.json +++ b/frontend/firebase.json @@ -17,6 +17,12 @@ "public": "build", "ignore": ["firebase.json", "**/.*", "**/node_modules/**"], "rewrites": [{ "source": "**", "destination": "/index.html" }] + }, + { + "target": "prism-khm", + "public": "build", + "ignore": ["firebase.json", "**/.*", "**/node_modules/**"], + "rewrites": [{ "source": "**", "destination": "/index.html" }] } ] } From e97daf796724522a2fca4a7eeb2fdd2373b93a44 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Laurent=20Sava=C3=ABte?= Date: Tue, 10 Oct 2023 11:55:21 +0200 Subject: [PATCH 06/57] Update getting started instructions --- README.md | 12 ++++++++++++ frontend/package.json | 1 + 2 files changed, 13 insertions(+) diff --git a/README.md b/README.md index d8a200c15..3ccb38f6c 100644 --- a/README.md +++ b/README.md @@ -284,6 +284,18 @@ This project was bootstrapped with [Create React App](https://github.com/faceboo - **Mapping** Uses [MapLibre](https://maplibre.org/maplibre-gl-js-docs/api/). The app supports Maptiler and Mapbox styles. To use Mapbox styles, you will need to create a token and add it as `REACT_APP_MAPBOX_TOKEN` in a `.env` file at the root folder. Then specify your style url using `REACT_APP_DEFAULT_STYLE`. - **WFP authentication** Uses [msal](https://github.com/AzureAD/microsoft-authentication-library-for-js). You need to include within your .env file the variables `REACT_APP_OAUTH_CLIENT_ID`, `REACT_APP_OAUTH_AUTHORITY` and `REACT_APP_OAUTH_REDIRECT_URI`. Also, set the `WFPAuthRequired` flag within the country prism.json file +### Developing the frontend + +The following commands should get you a local development instance of the frontend: + +``` +cd frontend +yarn clean +yarn install +yarn setup:common +REACT_APP_COUNTRY=cambodia yarn start +``` + ### Available Scripts In the project directory, you can run: diff --git a/frontend/package.json b/frontend/package.json index 320aaec53..b10313263 100644 --- a/frontend/package.json +++ b/frontend/package.json @@ -15,6 +15,7 @@ ] }, "scripts": { + "clean": "rimraf ./node_modules && pushd ../common && rimraf ./node_modules && popd", "start": "cross-env EXTEND_ESLINT=true react-scripts start", "analyze": "yarn build && npx source-map-explorer 'build/static/js/*.js'", "build": "cross-env EXTEND_ESLINT=true react-app-rewired build", From bca298f7869a31af5417cf9f07f0f38e43f44e4b Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Laurent=20Sava=C3=ABte?= Date: Tue, 10 Oct 2023 12:30:25 +0200 Subject: [PATCH 07/57] Use poetry to manage python dependencies --- api/Dockerfile | 54 +- api/Makefile | 4 +- api/docker-compose.test.yml | 18 + api/poetry.lock | 2669 +++++++++++++++++++++++++++++++++-- api/pyproject.toml | 30 +- api/requirements.txt | 61 - 6 files changed, 2674 insertions(+), 162 deletions(-) delete mode 100644 api/requirements.txt diff --git a/api/Dockerfile b/api/Dockerfile index f4772dc6b..9866c4b21 100644 --- a/api/Dockerfile +++ b/api/Dockerfile @@ -1,23 +1,51 @@ -# only image with python 3.10 on it -# other GDAL images use python 3.8 -# This provides GDAL 3.6dev -FROM osgeo/gdal:ubuntu-small-latest +FROM ghcr.io/osgeo/gdal:ubuntu-full-3.7.0 -COPY ./app /app +ENV PYTHONPATH=/ -WORKDIR /app/ +ENV POETRY_VERSION=1.6.1 +# install poetry in this location +ENV POETRY_HOME="/opt/poetry" -ENV PYTHONPATH=/ +# do not ask any interactive question +ENV POETRY_NO_INTERACTION=1 +# set the cache location so we can mount docker buildx cache on it +ENV POETRY_CACHE_DIR=/root/.cache + +# set poetry to use the system python env so we get all +# the GDAL packages which are already installed. This goes +# against best practice, but follows the logic in place before +# the switch to poetry +ENV POETRY_VIRTUALENVS_CREATE=false + +ENV PATH="$POETRY_HOME/bin:$PATH" + +RUN --mount=type=cache,target=/root/.cache curl -sSL https://install.python-poetry.org | python3 - -COPY requirements.txt . +# COPY requirements.txt . # copy pyproject so that black and isort use the right config COPY pyproject.toml / -RUN apt update -RUN apt install -y python3-pip libpq-dev +COPY poetry.lock / + +RUN --mount=type=cache,target=/var/cache/apt \ + apt-get update && \ + apt-get --no-install-recommends install -y python3-pip libpq-dev curl python3-dev build-essential RUN pip install --upgrade pip -RUN pip install -r requirements.txt -RUN playwright install chromium -RUN playwright install-deps + +RUN --mount=type=cache,target=/root/.cache \ + poetry install + +# RUN --mount=type=cache,target=/root/.cache poetry run playwright install chromium +RUN poetry run playwright install chromium +# playwright installs a lot of apt packages +RUN --mount=type=cache,target=/root/.cache \ + --mount=type=cache,target=/var/lib/apt \ + --mount=type=cache,target=/var/cache/apt \ + poetry run playwright install-deps + +# keep this copy towards the end to help with caching previous layers +COPY ./app /app + +WORKDIR /app/ EXPOSE 80 diff --git a/api/Makefile b/api/Makefile index 5bbb3bcb6..3c75dabc8 100644 --- a/api/Makefile +++ b/api/Makefile @@ -11,8 +11,8 @@ logs: docker compose -f docker-compose.yml -f docker-compose.deploy.yml logs -f api-lint: - docker compose run --no-deps api bash -c "black ." - docker compose run --no-deps api bash -c "isort ." + docker compose run --no-deps api bash -c "poetry run black ." + docker compose run --no-deps api bash -c "poetry run isort ." api-typecheck: docker compose run --no-deps api bash -c "mypy ." diff --git a/api/docker-compose.test.yml b/api/docker-compose.test.yml index d1858a43b..d4f7d66da 100644 --- a/api/docker-compose.test.yml +++ b/api/docker-compose.test.yml @@ -26,3 +26,21 @@ services: - POSTGRES_DB=postgres - POSTGRES_PORT=5432 - POSTGRES_PASSWORD=!ChangeMe! + + frontend: + # small wrapper around the frontend code to make it easier to run + # python tests against it + build: + context: .. + dockerfile: ./frontend/Dockerfile + command: yarn start + environment: + - REACT_APP_COUNTRY=cambodia + ports: + - "3000:3000" + volumes: + - ../common:/common + - ../frontend:/frontend + +networks: + testnet: diff --git a/api/poetry.lock b/api/poetry.lock index d75a6f161..fcc2733ac 100644 --- a/api/poetry.lock +++ b/api/poetry.lock @@ -1,5 +1,70 @@ # This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. +[[package]] +name = "affine" +version = "2.4.0" +description = "Matrices describing affine transformation of the plane" +optional = false +python-versions = ">=3.7" +files = [ + {file = "affine-2.4.0-py3-none-any.whl", hash = "sha256:8a3df80e2b2378aef598a83c1392efd47967afec4242021a0b06b4c7cbc61a92"}, + {file = "affine-2.4.0.tar.gz", hash = "sha256:a24d818d6a836c131976d22f8c27b8d3ca32d0af64c1d8d29deb7bafa4da1eea"}, +] + +[package.extras] +dev = ["coveralls", "flake8", "pydocstyle"] +test = ["pytest (>=4.6)", "pytest-cov"] + +[[package]] +name = "anyio" +version = "3.7.1" +description = "High level compatibility layer for multiple asynchronous event loop implementations" +optional = false +python-versions = ">=3.7" +files = [ + {file = "anyio-3.7.1-py3-none-any.whl", hash = "sha256:91dee416e570e92c64041bd18b900d1d6fa78dff7048769ce5ac5ddad004fbb5"}, + {file = "anyio-3.7.1.tar.gz", hash = "sha256:44a3c9aba0f5defa43261a8b3efb97891f2bd7d804e0e1f56419befa1adfc780"}, +] + +[package.dependencies] +exceptiongroup = {version = "*", markers = "python_version < \"3.11\""} +idna = ">=2.8" +sniffio = ">=1.1" + +[package.extras] +doc = ["Sphinx", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme (>=1.2.2)", "sphinxcontrib-jquery"] +test = ["anyio[trio]", "coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "mock (>=4)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"] +trio = ["trio (<0.22)"] + +[[package]] +name = "attrs" +version = "23.1.0" +description = "Classes Without Boilerplate" +optional = false +python-versions = ">=3.7" +files = [ + {file = "attrs-23.1.0-py3-none-any.whl", hash = "sha256:1f28b4522cdc2fb4256ac1a020c78acf9cba2c6b461ccd2c126f3aa8e8335d04"}, + {file = "attrs-23.1.0.tar.gz", hash = "sha256:6279836d581513a26f1bf235f9acd333bc9115683f14f7e8fae46c98fc50e015"}, +] + +[package.extras] +cov = ["attrs[tests]", "coverage[toml] (>=5.3)"] +dev = ["attrs[docs,tests]", "pre-commit"] +docs = ["furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier", "zope-interface"] +tests = ["attrs[tests-no-zope]", "zope-interface"] +tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"] + +[[package]] +name = "backoff" +version = "2.2.1" +description = "Function decoration for backoff and retry" +optional = false +python-versions = ">=3.7,<4.0" +files = [ + {file = "backoff-2.2.1-py3-none-any.whl", hash = "sha256:63579f9a0628e06278f7e47b7d7d5b6ce20dc65c5e96a6f3ca99a6adca0396e8"}, + {file = "backoff-2.2.1.tar.gz", hash = "sha256:03f829f5bb1923180821643f8753b0502c3b682293992485b0eef2807afa5cba"}, +] + [[package]] name = "black" version = "23.9.1" @@ -46,6 +111,58 @@ d = ["aiohttp (>=3.7.4)"] jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"] uvloop = ["uvloop (>=0.15.2)"] +[[package]] +name = "boto3" +version = "1.28.62" +description = "The AWS SDK for Python" +optional = false +python-versions = ">= 3.7" +files = [ + {file = "boto3-1.28.62-py3-none-any.whl", hash = "sha256:0dfa2fc96ccafce4feb23044d6cba8b25075ad428a0c450d369d099c6a1059d2"}, + {file = "boto3-1.28.62.tar.gz", hash = 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"cachetools" +version = "5.3.1" +description = "Extensible memoizing collections and decorators" +optional = false +python-versions = ">=3.7" +files = [ + {file = "cachetools-5.3.1-py3-none-any.whl", hash = "sha256:95ef631eeaea14ba2e36f06437f36463aac3a096799e876ee55e5cdccb102590"}, + {file = "cachetools-5.3.1.tar.gz", hash = "sha256:dce83f2d9b4e1f732a8cd44af8e8fab2dbe46201467fc98b3ef8f269092bf62b"}, +] + [[package]] name = "certifi" version = "2023.7.22" @@ -170,6 +287,51 @@ files = [ [package.dependencies] colorama = {version = "*", markers = "platform_system == \"Windows\""} +[[package]] +name = "click-plugins" +version = "1.1.1" +description = "An extension module for click to enable registering CLI commands via setuptools entry-points." +optional = false +python-versions = "*" +files = [ + {file = "click-plugins-1.1.1.tar.gz", hash = "sha256:46ab999744a9d831159c3411bb0c79346d94a444df9a3a3742e9ed63645f264b"}, + {file = "click_plugins-1.1.1-py2.py3-none-any.whl", hash = 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lock-version = "2.0" python-versions = "<3.11,>=3.8.0" -content-hash = "4547f26fc6f20e41b5c1db72cd5d2d183fe6224c0c3bcc480bd8bb2bedafff1c" +content-hash = "ba84200a5ad4549e3b2c7776e799219cc18aee08149977298e516f6299002d07" diff --git a/api/pyproject.toml b/api/pyproject.toml index 2dc801ebe..abc1aea3c 100644 --- a/api/pyproject.toml +++ b/api/pyproject.toml @@ -9,15 +9,35 @@ license = "Apache 2.0" PyJWT = "2.4.0" python = "<3.11,>=3.8.0" requests = "^2.25.1" +playwright = "1.38.0" +fastapi = "^0.103.2" +schemathesis = "^3.19.7" +uvicorn = { extras = ["standard"], version = "^0.23.2" } +sqlalchemy = "^1.4.40" +rasterio = "^1.3.8" +pydantic = { version = "1.9.2", extras = ["email"] } +python-dateutil = "2.8.2" +types-python-dateutil = "2.8.19" +psycopg2 = "^2.9.9" +shapely = "^1.8.2" +rasterstats = "0.17.0" +boto3 = "^1.28.61" +cachetools = "^5.3.1" +odc-geo = "^0.4.1" +odc-stac = "^0.3.6" +pystac-client = "^0.7.5" +pystac = "^1.8.4" +pytest-asyncio = "^0.21.1" +pytest-playwright = "^0.4.3" -[tool.poetry.dev-dependencies] +[tool.poetry.group.dev.dependencies] black = "^23.9.0" isort = "^5.12.0" +mypy = "^1.5.1" +pytest = "^7.4.2" [[tool.mypy.overrides]] -module = [ - "backoff", -] +module = ["backoff"] ignore_missing_imports = true [tool.black] @@ -25,7 +45,7 @@ line-length = 88 [tool.isort] profile = "black" -multi_line_output = 3 # Vertical Hanging Indent +multi_line_output = 3 # Vertical Hanging Indent src_paths = "prism-app/api" [build-system] diff --git a/api/requirements.txt b/api/requirements.txt deleted file mode 100644 index 1e367f5ac..000000000 --- a/api/requirements.txt +++ /dev/null @@ -1,61 +0,0 @@ -certifi==2023.5.7 -charset-normalizer==3.2.0 -exceptiongroup==1.1.2 -greenlet==2.0.2 -idna==3.4 -iniconfig==2.0.0 -packaging==23.1 -playwright==1.35.0 -pluggy==1.2.0 -py==1.11.0 -boto3==1.26.26 -cachetools==5.2.0 -fastapi==0.95.2 -Fiona==1.8.22 -gunicorn==20.1.0 -odc-geo==0.3.2 -odc-stac==0.3.6 -pystac-client==0.7.2 -pystac==1.8.1 -rasterstats==0.17.0 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12:34:04 +0200 Subject: [PATCH 08/57] Add docker image for frontend to run python tests against --- .dockerignore | 7 +++++ api/Makefile | 1 + api/app/report.py | 28 ++++++++++++++----- api/app/tests/test_playwright_renderer.py | 6 ++-- frontend/Dockerfile | 23 +++++++++++++++ .../ExposureAnalysisActions/index.tsx | 4 +-- 6 files changed, 57 insertions(+), 12 deletions(-) create mode 100644 .dockerignore create mode 100644 frontend/Dockerfile diff --git a/.dockerignore b/.dockerignore new file mode 100644 index 000000000..23f925fb1 --- /dev/null +++ b/.dockerignore @@ -0,0 +1,7 @@ +# this file is only used to build the frontend image +# NOT for the python api (see api/.dockerignore for that) +common/node_modules/** +frontend/node_modules/** +alerting/* +api/* +docs/* diff --git a/api/Makefile b/api/Makefile index 3c75dabc8..3fffb397e 100644 --- a/api/Makefile +++ b/api/Makefile @@ -1,5 +1,6 @@ build: docker compose build api + docker compose -f docker-compose.yml -f docker-compose.test.yml build frontend api: docker compose -f docker-compose.yml -f docker-compose.develop.yml up diff --git a/api/app/report.py b/api/app/report.py index bb04a379b..99a6e6413 100644 --- a/api/app/report.py +++ b/api/app/report.py @@ -3,7 +3,7 @@ from urllib.parse import parse_qs, urlparse from app.caching import CACHE_DIRECTORY -from playwright.async_api import async_playwright +from playwright.async_api import async_playwright, expect # Html selectors LAYER_ACCORDION_SELECTOR: Final[ @@ -48,19 +48,33 @@ async def download_report( # Toggle level two dropdowns await toggle_every_visible_dropdown(page) + # Enable flood extent buttons + flood_extent_checkbox = page.get_by_role("checkbox", name="Flood extent") + await expect(flood_extent_checkbox).to_be_visible() + await expect(flood_extent_checkbox).not_to_be_checked() + await expect(page.get_by_role("button", name="Exposure Analysis")).to_be_disabled() + + flood_extent_checkbox.click() + await expect(flood_extent_checkbox).to_be_checked(timeout=10_000) + await expect(page.get_by_role("button", name="Exposure Analysis")).not_to_be_disabled() + # Click on exposure analysis toggle button await click_target_exposure_analysis(page, layerIdParam) # Wait for page to be loaded on exposure analysis - await page.wait_for_selector(CREATE_REPORT_BUTTON_SELECTOR, state="visible") + await page.wait_for_selector('div[id="full-width-tabpanel-2"]', state="visible") - # Change language if not english - await change_language_if_not_default(page, language) + await page.wait_for_selector('div[class="memo-analysisButtonContainer-140"]', state="visible") - # Click on the pdf-renderer preview report button - await click_create_report_button(page) + await page.wait_for_selector(CREATE_REPORT_BUTTON_SELECTOR, state="attached") - # Wait for report to be created by pdf-renderer + # # Change language if not english + await change_language_if_not_default(page, language) + # + # # Click on the pdf-renderer preview report button + await click_create_report_button(page) + # + # # Wait for report to be created by pdf-renderer await page.wait_for_selector(DOWNLOAD_BUTTON_SELECTOR) # Download file on disk diff --git a/api/app/tests/test_playwright_renderer.py b/api/app/tests/test_playwright_renderer.py index 97a58aff8..2edac559a 100644 --- a/api/app/tests/test_playwright_renderer.py +++ b/api/app/tests/test_playwright_renderer.py @@ -22,7 +22,7 @@ async def test_download_report(): # Act report_path: str = await download_report( - "https://prism-900.surge.sh/?hazardLayerIds=flood_extent%2Cews_remote&date=2023-07-07", + "http://frontend:3000/?hazardLayerIds=flood_extent%2Cews_remote&date=2023-07-07", "flood_extent", "cambodia", "en", @@ -49,12 +49,12 @@ async def test_should_load_report_from_cache_if_present(playwright_mock): # Act report_path: str = await download_report( - "https://prism-900.surge.sh/?hazardLayerIds=flood_extent&date=2023-07-07", + "https://frontend:3000/?hazardLayerIds=flood_extent&date=2023-07-07", "flood_extent", "cambodia", "en", ) - # Arrange + # Assert assert report_path == EXPECTED_REPORT_FILEPATH playwright_mock.assert_not_called() diff --git a/frontend/Dockerfile b/frontend/Dockerfile new file mode 100644 index 000000000..e40627c91 --- /dev/null +++ b/frontend/Dockerfile @@ -0,0 +1,23 @@ +# A small image around the frontend code +# that makes it easier to run python tests +# against the frontend using playwright +FROM node:16-bookworm + +# copy dependencies definitions for better caching +WORKDIR /common/ + +COPY ./common ./ + +WORKDIR /frontend/ +COPY frontend/package.json ./ + +COPY frontend/yarn.lock ./ + +RUN yarn install --frozen-lockfile && yarn setup:common + +# copy the rest of the source code +COPY ./frontend . + +RUN GENERATE_SOURCEMAP=true REACT_APP_COUNTRY=cambodia yarn build + +EXPOSE 3000 diff --git a/frontend/src/components/MapView/LeftPanel/AnalysisPanel/ExposureAnalysisActions/index.tsx b/frontend/src/components/MapView/LeftPanel/AnalysisPanel/ExposureAnalysisActions/index.tsx index cbe8bf6d5..8d7e82d8e 100644 --- a/frontend/src/components/MapView/LeftPanel/AnalysisPanel/ExposureAnalysisActions/index.tsx +++ b/frontend/src/components/MapView/LeftPanel/AnalysisPanel/ExposureAnalysisActions/index.tsx @@ -143,13 +143,13 @@ function ExposureAnalysisActions({ )} {/* Hide the preview report button for now. Report creation happens in the backend and is cached. */} - {/* */} + )} - {/* Hide the preview report button for now. Report creation happens in the backend and is cached. */} From 735327729215834049ac01b9e6b08eb93aa7d207 Mon Sep 17 00:00:00 2001 From: Eric Boucher Date: Wed, 18 Oct 2023 18:24:00 +0200 Subject: [PATCH 45/57] re-add playwright test --- .github/workflows/api.yml | 3 +-- api/app/report.py | 6 ------ 2 files changed, 1 insertion(+), 8 deletions(-) diff --git a/.github/workflows/api.yml b/.github/workflows/api.yml index 161407abd..8b67ef6c0 100644 --- a/.github/workflows/api.yml +++ b/.github/workflows/api.yml @@ -53,5 +53,4 @@ jobs: run: cd api && make build - name: Run tests run: cd api && make api-test - - name: DEBUG check containers are still running - run: docker ps -a + diff --git a/api/app/report.py b/api/app/report.py index a07946725..ae2d6d917 100644 --- a/api/app/report.py +++ b/api/app/report.py @@ -19,12 +19,6 @@ PAGE_LANGUAGE_CHANGE_TIMEOUT: Final[int] = 10000 -# FIXME: this test works locally through make api-test but fails in CI. -# One possible reason is that volumes cannot be mounted -# (guessed, logs don't show anything) -@pytest.mark.skip( - reason="docker compose frontend service stops immediately when started" -) async def download_report( url: str, layerIdParam: str, country: str, language: Optional[str] ) -> str: From a73ddd90e435c7201fd1601ecbc84df627308405 Mon Sep 17 00:00:00 2001 From: Eric Boucher Date: Wed, 18 Oct 2023 18:29:37 +0200 Subject: [PATCH 46/57] Force migrate_test_db to run first --- api/app/tests/test_api.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/api/app/tests/test_api.py b/api/app/tests/test_api.py index 81bae56d3..6a5b70198 100644 --- a/api/app/tests/test_api.py +++ b/api/app/tests/test_api.py @@ -48,7 +48,7 @@ def migrate_test_db(): @pytest.fixture(scope="session", autouse=True) -def add_test_users(): +def add_test_users(migrate_test_db): # noqa: F811 add_users() From a27c9932aca1d02f53368e0644ff1773f32a5f1b Mon Sep 17 00:00:00 2001 From: Eric Boucher Date: Wed, 18 Oct 2023 18:32:38 +0200 Subject: [PATCH 47/57] Update test_api.py --- api/app/tests/test_api.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/api/app/tests/test_api.py b/api/app/tests/test_api.py index 6a5b70198..5c66235cc 100644 --- a/api/app/tests/test_api.py +++ b/api/app/tests/test_api.py @@ -48,7 +48,7 @@ def migrate_test_db(): @pytest.fixture(scope="session", autouse=True) -def add_test_users(migrate_test_db): # noqa: F811 +def add_test_users(migrate_test_db): # noqa: F811 add_users() From 8b21cb05257fe30a5b707793c1643721ec2da4b5 Mon Sep 17 00:00:00 2001 From: Eric Boucher Date: Thu, 19 Oct 2023 10:11:45 +0200 Subject: [PATCH 48/57] Improve wait for it script for curl --- api/Makefile | 4 ++-- api/utils/wait-for-it.sh | 9 ++------- 2 files changed, 4 insertions(+), 9 deletions(-) diff --git a/api/Makefile b/api/Makefile index d027b7117..54da177fe 100644 --- a/api/Makefile +++ b/api/Makefile @@ -22,10 +22,10 @@ test-services: docker compose -f docker-compose.yml -f docker-compose.test.yml up -d api-test: test-services - docker compose -f docker-compose.yml -f docker-compose.test.yml run api bash -c "../wait-for-it.sh frontend:3000 -t 60" + docker compose -f docker-compose.yml -f docker-compose.test.yml run api bash -c "../wait-for-it.sh frontend:3000 -t 120" docker compose -f docker-compose.yml -f docker-compose.test.yml run api bash -c "pytest -s tests" || true - docker ps -a # check that the frontend is still running docker compose -f docker-compose.yml -f docker-compose.test.yml logs frontend + docker compose -f docker-compose.yml -f docker-compose.test.yml down api-add-users: docker compose -f docker-compose.yml -f docker-compose.develop.yml run api bash -c "python scripts/add_users.py" diff --git a/api/utils/wait-for-it.sh b/api/utils/wait-for-it.sh index d990e0d36..f3fb47f2e 100755 --- a/api/utils/wait-for-it.sh +++ b/api/utils/wait-for-it.sh @@ -32,13 +32,8 @@ wait_for() WAITFORIT_start_ts=$(date +%s) while : do - if [[ $WAITFORIT_ISBUSY -eq 1 ]]; then - nc -z $WAITFORIT_HOST $WAITFORIT_PORT - WAITFORIT_result=$? - else - (echo -n > /dev/tcp/$WAITFORIT_HOST/$WAITFORIT_PORT) >/dev/null 2>&1 - WAITFORIT_result=$? - fi + curl --output /dev/null --silent --head --fail $WAITFORIT_HOST:$WAITFORIT_PORT + WAITFORIT_result=$? if [[ $WAITFORIT_result -eq 0 ]]; then WAITFORIT_end_ts=$(date +%s) echoerr "$WAITFORIT_cmdname: $WAITFORIT_HOST:$WAITFORIT_PORT is available after $((WAITFORIT_end_ts - WAITFORIT_start_ts)) seconds" From 04bf8671b695be08aae3258f7f628370ad4e9c51 Mon Sep 17 00:00:00 2001 From: Eric Boucher Date: Thu, 19 Oct 2023 11:53:00 +0200 Subject: [PATCH 49/57] Update index.tsx --- .../LeftPanel/AnalysisPanel/ExposureAnalysisActions/index.tsx | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/frontend/src/components/MapView/LeftPanel/AnalysisPanel/ExposureAnalysisActions/index.tsx b/frontend/src/components/MapView/LeftPanel/AnalysisPanel/ExposureAnalysisActions/index.tsx index dd0bc1a83..a9885ce2d 100644 --- a/frontend/src/components/MapView/LeftPanel/AnalysisPanel/ExposureAnalysisActions/index.tsx +++ b/frontend/src/components/MapView/LeftPanel/AnalysisPanel/ExposureAnalysisActions/index.tsx @@ -147,7 +147,7 @@ function ExposureAnalysisActions({ className={bottomButton} onClick={handleToggleReport(true)} // Hide the preview report button for now. Report creation happens in the backend and is cached. - style={{ position: 'absolute', visibility: 'hidden' }} + style={{ position: 'absolute', height: 0, width: 0 }} > {t('Preview Report (slow)')} From ad52242bb78a8481e476d4b5b07e98a4afd90cfe Mon Sep 17 00:00:00 2001 From: Eric Boucher Date: Thu, 19 Oct 2023 11:54:16 +0200 Subject: [PATCH 50/57] Update Makefile --- api/Makefile | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/api/Makefile b/api/Makefile index 54da177fe..d7e52df3e 100644 --- a/api/Makefile +++ b/api/Makefile @@ -1,6 +1,5 @@ build: - docker compose build api - docker compose -f docker-compose.yml -f docker-compose.test.yml build frontend + docker compose -f docker-compose.yml -f docker-compose.test.yml build api: docker compose -f docker-compose.yml -f docker-compose.develop.yml up From 364aa30ea9b22038e15c2b0ef68cf48f9f682fda Mon Sep 17 00:00:00 2001 From: Eric Boucher Date: Thu, 19 Oct 2023 13:29:42 +0200 Subject: [PATCH 51/57] pre pull --- api/Makefile | 1 + 1 file changed, 1 insertion(+) diff --git a/api/Makefile b/api/Makefile index d7e52df3e..3433f364a 100644 --- a/api/Makefile +++ b/api/Makefile @@ -1,5 +1,6 @@ build: docker compose -f docker-compose.yml -f docker-compose.test.yml build + docker compose -f docker-compose.yml -f docker-compose.test.yml pull api: docker compose -f docker-compose.yml -f docker-compose.develop.yml up From c45bbfa9ce34ae5762b11e773b7fa38c5d94a92c Mon Sep 17 00:00:00 2001 From: Eric Boucher Date: Thu, 19 Oct 2023 13:31:05 +0200 Subject: [PATCH 52/57] Wait 3 minutes for frontend to be ready --- api/Makefile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/api/Makefile b/api/Makefile index 3433f364a..77d642d61 100644 --- a/api/Makefile +++ b/api/Makefile @@ -22,7 +22,7 @@ test-services: docker compose -f docker-compose.yml -f docker-compose.test.yml up -d api-test: test-services - docker compose -f docker-compose.yml -f docker-compose.test.yml run api bash -c "../wait-for-it.sh frontend:3000 -t 120" + docker compose -f docker-compose.yml -f docker-compose.test.yml run api bash -c "../wait-for-it.sh frontend:3000 -t 180" docker compose -f docker-compose.yml -f docker-compose.test.yml run api bash -c "pytest -s tests" || true docker compose -f docker-compose.yml -f docker-compose.test.yml logs frontend docker compose -f docker-compose.yml -f docker-compose.test.yml down From c2615d1913c7ffda8a9b0d4884275ae17dd4880d Mon Sep 17 00:00:00 2001 From: Eric Boucher Date: Thu, 19 Oct 2023 15:36:02 +0200 Subject: [PATCH 53/57] re-add schematesis --- api/app/tests/test_api.py | 10 +++++----- api/pyproject.toml | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/api/app/tests/test_api.py b/api/app/tests/test_api.py index 5c66235cc..1ac348c8f 100644 --- a/api/app/tests/test_api.py +++ b/api/app/tests/test_api.py @@ -2,7 +2,7 @@ import pytest -# import schemathesis +import schemathesis from app.database.database import AlertsDataBase from app.main import app from app.scripts.add_users import add_users @@ -52,17 +52,17 @@ def add_test_users(migrate_test_db): # noqa: F811 add_users() -# schema = schemathesis.from_asgi("/openapi.json", app) +schema = schemathesis.from_asgi("/openapi.json", app) # install all available compatibility fixups between schemathesis and fastapi # see https://schemathesis.readthedocs.io/en/stable/compatibility.html -# schemathesis.fixups.install(["fast_api"]) +schemathesis.fixups.install(["fast_api"]) client = TestClient(app) @pytest.mark.skip(reason="Slow: takes almost 10 minutes to complete") -# @schema.parametrize(endpoint="^/stats") +@schema.parametrize(endpoint="^/stats") @settings(max_examples=1) def test_stats_api(case): """ @@ -79,7 +79,7 @@ def test_stats_api(case): @pytest.mark.skip(reason="Slow: takes almost 10 minutes to complete") -# @schema.parametrize(endpoint="^/alerts") +@schema.parametrize(endpoint="^/alerts") @settings(max_examples=10) def test_alerts_api(case): """ diff --git a/api/pyproject.toml b/api/pyproject.toml index 4b2bb6811..acc5c25ff 100644 --- a/api/pyproject.toml +++ b/api/pyproject.toml @@ -11,7 +11,7 @@ python = "<3.11,>=3.8.0" requests = "^2.25.1" playwright = "1.38.0" fastapi = "^0.103.2" -schemathesis = "^3.19.7" +schemathesis = "^3.20.0" uvicorn = { extras = ["standard"], version = "^0.23.2" } sqlalchemy = "^1.4.40" rasterio = "^1.3.8" From 75e006ee0f94b2473996acd6cca8080cbe5866f5 Mon Sep 17 00:00:00 2001 From: Eric Boucher Date: Thu, 19 Oct 2023 15:58:04 +0200 Subject: [PATCH 54/57] Update pyproject.toml --- api/pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/api/pyproject.toml b/api/pyproject.toml index acc5c25ff..4b2bb6811 100644 --- a/api/pyproject.toml +++ b/api/pyproject.toml @@ -11,7 +11,7 @@ python = "<3.11,>=3.8.0" requests = "^2.25.1" playwright = "1.38.0" fastapi = "^0.103.2" -schemathesis = "^3.20.0" +schemathesis = "^3.19.7" uvicorn = { extras = ["standard"], version = "^0.23.2" } sqlalchemy = "^1.4.40" rasterio = "^1.3.8" From 5e038c1fde9baec77318864eba06517e2b56a807 Mon Sep 17 00:00:00 2001 From: Eric Boucher Date: Thu, 19 Oct 2023 16:27:39 +0200 Subject: [PATCH 55/57] Update test_api.py --- api/app/tests/test_api.py | 1 - 1 file changed, 1 deletion(-) diff --git a/api/app/tests/test_api.py b/api/app/tests/test_api.py index 1ac348c8f..64a545b0f 100644 --- a/api/app/tests/test_api.py +++ b/api/app/tests/test_api.py @@ -1,7 +1,6 @@ from unittest.mock import patch import pytest - import schemathesis from app.database.database import AlertsDataBase from app.main import app From 0fb74c81d720754773e13432940c22b9a4842050 Mon Sep 17 00:00:00 2001 From: Eric Boucher Date: Thu, 19 Oct 2023 16:50:20 +0200 Subject: [PATCH 56/57] Update Makefile --- api/Makefile | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/api/Makefile b/api/Makefile index 77d642d61..19ef82b81 100644 --- a/api/Makefile +++ b/api/Makefile @@ -23,8 +23,7 @@ test-services: api-test: test-services docker compose -f docker-compose.yml -f docker-compose.test.yml run api bash -c "../wait-for-it.sh frontend:3000 -t 180" - docker compose -f docker-compose.yml -f docker-compose.test.yml run api bash -c "pytest -s tests" || true - docker compose -f docker-compose.yml -f docker-compose.test.yml logs frontend + docker compose -f docker-compose.yml -f docker-compose.test.yml run api bash -c "pytest -s tests" docker compose -f docker-compose.yml -f docker-compose.test.yml down api-add-users: From a81e16812fcfa925ad69165f07078bb0fe3c7121 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Laurent=20Sava=C3=ABte?= Date: Fri, 20 Oct 2023 15:03:45 +0200 Subject: [PATCH 57/57] Fix crash in openapi generation It failed with a function is not JSON serializable error. --- api/app/auth.py | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/api/app/auth.py b/api/app/auth.py index 7835715cb..4711aa8f4 100644 --- a/api/app/auth.py +++ b/api/app/auth.py @@ -3,6 +3,7 @@ import hashlib import logging import secrets +from typing import Annotated from app.database.database import AuthDataBase from app.database.user_info_model import UserInfoModel @@ -18,6 +19,11 @@ auth_db = AuthDataBase() if not auth_db.active: + # in local development, this condition might be true + # in which case the openapi introspection can generate + # strange results in the openapi.json output. + # eg. /kobo/forms might require a body in a GET request + # which is invalid. depends = lambda *_: True @@ -36,7 +42,9 @@ def verify_hash(password: str, saved_salt: str) -> bytes: return key -def validate_user(credentials: HTTPBasicCredentials = depends) -> UserInfoModel: +def validate_user( + credentials: Annotated[HTTPBasicCredentials, depends] +) -> UserInfoModel: """Validate user info.""" if not auth_db.active: return UserInfoModel(access={})