MentaLiST 0.1.9 bioconda not installing most recent build

[apetkau]

I noticed when creating a new MentaLiST conda environment that is not installing the most recent build for 0.1.9. For example, if I run:

conda create --name mentalist mentalist=0.1.9

The packages that will be installed include:

  mentalist          bioconda/linux-64::mentalist-0.1.9-h152c27e_2
  julia              conda-forge/linux-64::julia-1.0.3-h1c3500e_3

That is, it will install build h152c27e_2 which I don't think specifies a specific Julia version (so Julia 1.0.3 gets installed, which is incompatible).

If I explicitly specify the build hbc14f71_4 (which should be more recent) I get the packages:

  mentalist          bioconda/linux-64::mentalist-0.1.9-hbc14f71_4
  julia              conda-forge/linux-64::julia-0.5.2-blas_openblas_200

That is, the correct version of Julia (0.5.2) gets installed.

I'm not sure why it's not defaulting to the most recent build. This may be more of a conda/bioconda specific issue. Is the same issue occurring for you?

[dfornika]

@apetkau I can confirm that I have the same issue when I try running:

conda create --name mentalist mentalist=0.1.9

There is a pull-request to rebuild mentalist here:

bioconda/bioconda-recipes#14656

...but it currently seems to have some problems of its own.

[apetkau]

Thanks for looking into this 😄

[apetkau]

@dfornika is it possible to force a re-build of mentalist, since this issue seems to still be occuring.

By the way, it looks like that pull request is trying to re-build mentalist 0.2.x rather than 0.1.9.

[apetkau]

Just as an update to this issue, the following list of dependencies can be used to install version 0.1.9 using:

conda create --name mentalist --file mentalist-0.1.9.env.txt

mentalist-0.1.9.env.txt