diff --git a/CHANGELOG.md b/CHANGELOG.md new file mode 100644 index 00000000..6c5bcfd2 --- /dev/null +++ b/CHANGELOG.md @@ -0,0 +1,1134 @@ +# Changelog + +## [1.10.0] - 2024-09-29 +- Allow to map funtions with vector arguments onto grid + E.g. for `f(x)=sum(x)` one can now do `map(f,grid)`. +- Make parts of simplexgrid constructor optional. + E.g. it is possible now to do just `simplexgrid(coord, cellnodes)`. In that + case, e.g. `grid[BFaceRegions]` will return a zero length vector. + +## [1.9.0] - 2024-07-07 +- Add edge partitioning induced from cell partitioning +- Overhaul of partitioning API + +## [1.8.0] - 2024-06-24 +- Correct node partitioning +- extended sg file format v2.2 with partitioning info +- Recursive metis partitioning + +## [1.7.0] - 2024-06-17 +- Partitioning for multithreading +- Metis extension +- extended subgrid method (new argument 'support' can be `ON_CELLS`, `ON_BFACES`, `ON_FACES`) +- SubGrid type has now a parameter that knows the support relative to parent grid, removed BoundarySubGrid type +- removed `get_facegrid`, `get_bfacegrid`, `get_edgegrid` in `derived.jl` (that offer no new functionality compared to subgrid) +- fixed default behaviour for coordinatesystem and restricted 1D coordinate sorting to project = true + +## [1.6.1] - 2024-06-07 + +- Drop support of Julia 1.6. Minimum Julia version is 1.9 +- TetGen + Triangulate extensions +- png instead of svg in docs + +## [1.5.1] - 2024-05-06 +- Grid consistency check +- Gmsh 0.3 + +## [1.4.0] - 2024-03-21 + +### Features + +- Move binnedpointlist to ExtendableGrids + +- New grid glueing algorithm using BinnedPointList + +- Fix docs, test + +- Merge pull request #42 from j-fu/mvbinned + +Move binned pointlist over here and use it for glueing +- Update! function to trigger reinstantioation of grid components; instantiate of Volumes components and FaceNormals and EdgeTangents keep existing arrays. + +- Merge pull request #41 from chmerdon/master + +Reinstantiation of CellVolumes, FaceNormals etc. + +## [1.3.2] - 2024-03-08 + +### Features + +- Fix documentation, all docstrings in output + +- Update ci for apple silicon + +- Add docstrings for commongrids + +- Add Aqua.jl tests + +- SimplexGridFactory isn't differently licensed + +- Bump patch version + + +## [1.3.1] - 2024-02-20 + +### Features + +- Fix subgrid coordinate system for boundary grids (#38) + +* fix subgrid coordinate system for boundary grids + +* use ExampleJuggler v2 (no Pluto dependency due to extensions) + +## [1.3.0] - 2024-02-05 + +### Features + +- Merge branch 'master' of https://github.com/chmerdon/ExtendableGrids.jl + +- New grid components ParentGridRelation, FaceParents, CellParents, BFaceParents, +some of them are now directly set during subgrid or refinement routines +(todo: set BFaceParents also in refinements) + +- Small fix + +- Small fix + +- Added BFaceParents to all refinement routines and some tests + +- Renamed NodeInParent to NodeParents, added a deprecated warning on this + +- New grid components ParentGridRelation, FaceParents, CellParents, BFaceParents, +some of them are now directly set during subgrid or refinement routines +(todo: set BFaceParents also in refinements) + +- Small fix + +- Small fix + +- Added BFaceParents to all refinement routines and some tests + +- Renamed NodeInParent to NodeParents, added a deprecated warning on this + +- Merge branch 'master' of github.com:j-fu/ExtendableGrids.jl + + +## [1.2.3] - 2024-01-19 + +### Features + +- Fix for subgrid in case there is empty boundary data in the parent grid (or probably also when the subgrid lies completely in the interior) + +- Modified the subgrid+extrusion test a bit to test if a subgrid for a completely interior region works (and it only does with the previous modifications) + +- Fix for subgrid in case there is empty boundary data (#36) + +* fix for subgrid in case there is empty boundary data in the parent grid (or probably also when the subgrid lies completely in the interior) + +* modified the subgrid+extrusion test a bit to test if a subgrid for a completely interior region works (and it only does with the previous modifications) +- Bump patch version + + +## [1.2.2] - 2023-11-29 + +### Features + +- Add more gmsh stuff +* handle geo files +* allow for `simplexgrid("my.msh")` and `simplexgrid("my.geo")` +* allow for `write("my.msh",grid) +* file handling with gmsh initializes and finalizes + +- Bump version + + +## [1.2.1] - 2023-11-28 + +### Features + +- Bugfixes for gmsh extension + +* handle node tags properly +* add more examples from gmsh docs + + +## [1.2.0] - 2023-11-23 + +### Features + +- Gmsh extension3 (#34) + +* Update ExtendableGridsGmshExt.jl + +* Add the seal function + +Computes the boundary faces of an incomplete simplexgrid and adds them to it + +* simplexgrid + mixedgrid functions for the gmsh extension are defined + +* add tests with different types (of indices & coordinates) for gmsh Y ExtendableGrids + +* add gmsh geometry description test + +* Document the gmsh stuff +--------- + +Co-authored-by: Jürgen Fuhrmann +- Use ExampleJuggler (#35) + +* moved tests to examplejuggler + +* move documentation to examplejuggler +- Add gmsh example + +- Small readme+docs update + +- Add J. Taraz to author lists + + +## [1.1.0] - 2023-07-25 + +### Features + +- Update Project.toml + +change Project.toml to incorporate the extension +- Create ExtendableGridsGmshExt.jl +- Update ExtendableGridsGmshExt.jl + +upload the (gmsh-) extension code +- Update simplexgrid.jl + +include function definitions with implementations in the gmsh extension +- Gmsh-files for tests +- (g)msh-files for the test of the extension +- Delete sto_2d.msh +- Delete sto_3d.msh +- Update runtests.jl + +added the tests of the gmsh extension +- Update Project.toml + +add dependencies for the gmsh extension +- Update Project.toml +- Update runtests.jl +- Merge pull request #32 from jotaraz/master + +gmsh ext +- Add requires for 1.6 + +- Remove assignment to gms.model for Julia <1.9 + +- Remove dummy simplexgrid(module) + +- Bump version + +- Merge pull request #33 from j-fu/gmsh-extension2 + +add requires for 1.6 + +## [1.0.0] - 2023-07-22 + +### Features + +- GeometryGroups (#27) + +* new type CellGeometryGroups that collect all cells of same CellGeometry as ordered in UniqueCellGeometries + +* view for VariableTargetAdjacency, less allocation in FaceNodes for mixed geometries + +--------- + +Co-authored-by: Christian Merdon +- Allow non-leaf types in ElementGeometries + +- New type CellGeometryGroups that collect all cells of same CellGeometry as ordered in UniqueCellGeometries + +- Added also FaceGeometryGroups etc. and assembly helpers + +- Init BEdgeRegions with an array, so that test for bedgemask works again + +- GeometryGroups > AssemblyGroups + +- Some small corrections, view for VariableTargetAdjacency, less allocation in FaceNodes for mixed geometries + +- Some small improvements + +- Merge pull request #31 from j-fu/geometry_groups + +some small changes +- Merge branch 'master' into quadmeshes + +- Merge pull request #30 from j-fu/quadmeshes + +Prepare for quadrilateral and cuboidal elements +- Set cairomakie invisible in tests + +- Set version to 1.0 for better semver + + +## [0.9.17] - 2023-02-10 + +### Features + +- Fix print_tree calls + +- Sorting coordinates of 1D subgrids + +- Use CairoMakie for plotting tests & docs + +- Merge pull request #22 from j-fu/sort_1d_subgrids + +Sort 1d subgrids + +## [0.9.16] - 2022-11-30 + +### Features + +- Remove allocation regression in Julia 1.9 - return Matrices as local_celledgenodes etc. instead of adjoints + + +## [0.9.15] - 2022-10-22 + +### Features + +- Cleanup type handling for simplexgrid constructors, 0.9.15 + +* Fixes stackoverflow error when calling simplexgrid with arrays of different index types + +* Detect index types from CellNode arrays + +* replace collect_or_assign by convert + +* add `bregions`, `cellregion` constructor to tensor grid constructor + +* Version bump + +- Fix CI for 1.6 + +- Fix CI for 1.6 - again + + +## [0.9.14] - 2022-10-19 + +### Features + +- BFaceRegions in grid after uniform_refine are still VectorOfConstants if BFaceRegions in source grid has been VectorOfConstants + +- Introduce barrier in volume calculation (#19) + + +- Bump version + + +## [0.9.13] - 2022-09-13 + +### Features + +- Fix unit test for writevtk + +- Create Invalidations.yml (#16) + +* Create Invalidations.yml + +This is based on https://github.com/julia-actions/julia-invalidations. Adding such checks came up in https://discourse.julialang.org/t/potential-performance-regressions-in-julia-1-8-for-special-un-precompiled-type-dispatches-and-how-to-fix-them/86359. I suggest to add this check here since this package is widely used as a dependency. + +See also SciML/MuladdMacro.jl#26 and SciML/MuladdMacro.jl#29 +- Missing bracket (#18) + + +- Bump version, allow AbstractTrees 0.4 + + +## [0.9.12] - 2022-06-23 + +### Features + +- Piecewise linear interpolation between simplexgrids + + +## [0.9.11] - 2022-06-21 + +### Features + +- Speed up of hot loops in bfacemask! and cellmask! + + +## [0.9.10] - 2022-06-16 + +### Features + +- Bregion numbers can now be functions of the current region, or zero to erase + + +## [0.9.9] - 2022-06-16 + +### Features + +- Bugfix for 3D rect! + + +## [0.9.8] - 2022-06-15 + +### Features + +- Bump to 0.9.8 - missed some commits + + +## [0.9.7] - 2022-06-15 + +### Features + +- Fix superfluous corner triangles in subgrid generation + +- Added rect! to regionedit - place surface info into rectangular grid + + +## [0.9.6] - 2022-05-13 + +### Features + +- Added barycentric refinement for Tetrahedron3D and some tests for uniform and barycentric refinement + + +## [0.9.5] - 2022-03-27 + +### Features + +- Improve glue performance +* allow to restrict tested regions +* removed allocations in main loop + + +## [0.9.4] - 2022-03-24 + +### Features + +- Added FaceEdgeSigns, version bump + + +## [0.9.3] - 2022-03-23 + +### Features + +- Added function for writing grid structure to vtk_write (#12) + +* Added function for writing grid structure to io.jl + +The writing of the VTK files uses the WriteVTK.jl package. +Hence, it was added as dependency. In addition to the grid structure, +point, cell, or field data can be written to the file. + +* julia1.6 now required, added test (needs SHA hash comparison to test Project.toml) + +Co-authored-by: chmerdon <57663257+chmerdon@users.noreply.github.com> +- Update ci.yml + +update to new minimum julia version dependency +- Update Project.toml + +## [0.9.2] - 2022-03-22 + +### Features + +- Fix for node ordering in tensor grid constructor such that no negative cell volumes occur + + +## [0.9.1] - 2022-02-21 + +### Features + +- Some bugfixes for unionizing update, version bump + + +## [0.9.0] - 2022-02-18 + +### Features + +- Unionize abstract types (#13) + +This relies on the built-in union split of Julia which seems to have no union size constraint anymore. This may remove some allocations... + +* Use "ElementGeomtries" -- union of Geometry leaf types -- as eltype for CellGeometries,BFaceGeomtries +* Similar with CoordinateSystems. +* fixed UniqueBFaceGeometries etc, reduced allocations in ItemVolumes instantiations (dispatch on CoordinateSystem seems to cause remaining allocations) +* use SVector for storing intermediate vector data +* Added more typestable getindex methods. +* use length of cx in cellfinder instead of x as length of x might not match) + +Co-authored-by: Christian Merdon + +- Version bump + + +## [0.8.11] - 2021-12-06 + +### Features + +- Glue and simplexgrid(xygrid, zcoord) now use Cint indices. + + +## [0.8.10] - 2021-11-13 + +### Features + +- Test against tol for lmismatch in geomspace + + +## [0.8.9] - 2021-11-10 + +### Features + +- Fix missing CoordinateSystem instantiation for subgrid + + +## [0.8.8] - 2021-11-03 + +### Features + +- Volume of Vertex0D set to 1 + +- Switch off plotting testset on windows system for now + +- Version bump + +## [0.8.7] - 2021-10-21 + +### Features + +- Added ringsector2d + + +## [0.8.6] - 2021-10-21 + +### Features + +- Modify 2D x Z tensorproduct API: make cell, bottom and top regions from +offsets of 2D cellregions + +- Bfacemask! for 3D, introduce allow_new flag + + +## [0.8.5] - 2021-10-20 + +### Features + +- Tensor product grid2d x coordZ + + +## [0.8.4] - 2021-10-20 + +### Features + +- Docstring for VoronoiFaceCenters + +- Add glue method for grids + +- Removed Base.RefValues from L2GTransformer struct and made it mutable (immutability seems to give no benefit here) + +- Merge branch 'master' of github.com:j-fu/ExtendableGrids.jl + + +## [0.8.3] - 2021-10-13 + +### Features + +- Add tests for geomspace, make assertion warnings more clear + +- Don't use yet X[begin] + +- Some more geomspace tweaks + +- Calculate VoronoiFaceCenters, take in tricircumcenter! + +- Add voronoi.jl + + +## [0.8.2] - 2021-10-07 + +### Features + +- Start to sort out documentation + +- Remove plotting test + +- Less allocations in instantiation of EdgeNodes + +- Less allocations in instantiation of FaceNormals and EdgeTangents, converted some Float64 to Tc + +- Some tweaks for geomspace + +- Merge branch 'master' of github.com:j-fu/ExtendableGrids.jl + +- Merge branch 'master' of https://github.com/j-fu/ExtendableGrids.jl + +- Reduced allocations in all mesh refinements, last remnants of GridAdjacencyTypes erased and replaced by Adjacency + + +## [0.8.1] - 2021-10-06 + +### Features + +- Nnodes_for_geometry/nfaces_for_geometry/nedges_for_geometry erased/merged into num_nodes/num_faces/num_edges that are now residing in shape_specs.jl, edges are always Edge1D (adjusted instantiation of EdgeNodes in derived.jl accordingly), erased GridAdjacencyTypes, added enum consistency tests also for Parallelepiped3D + +- Activated L2GTransfer, AssemblyTypes, CellFinder (moved from GradientRobustMultiPhysics) and respective tests; renamed BFaces to BFaceFaces and BEdges to BEdgeEdges + +- Version 0.8.1 + +- Ch Merdon as author + +- Set EdgeGeometries in instantiation of EdgesNodes in 1D and 2D + +- Merge branch 'master' of https://github.com/j-fu/ExtendableGrids.jl + +- Merge branch 'master' of github.com:j-fu/ExtendableGrids.jl + + +## [0.8.0] - 2021-10-05 + +### Features + +- Phase 1 Transfer of gridstuff from GradienRobustMultiPhysics (#11) + +* Phase 1 Transfer of gridstuff from GradienRobustMultiPhysics + +- Bump version + + +## [0.7.9] - 2021-07-09 + +### Features + +- Added boundary edge regions (#10) + +* Added boundary edge regions + +* Extended constructor for simplexgrid + +* Fixed missing assignment of boundary edge node adjacency + +Co-authored-by: Matthias Liero +- Bump version + + +## [0.7.8] - 2021-07-02 + +### Features + +- Bugfix for BFaceCells, relax parameter types in simplexgrid() constructor + + +## [0.7.7] - 2021-06-15 + +### Features + +- Type-annotated some methods + +- Compute adjacency between boundary faces and edges. (#8) + +* Compute adjacency between boundary faces and edges. + +* Added missing methods + +Co-authored-by: Matthias Liero +- Merge branch 'master' of github.com:j-fu/ExtendableGrids.jl + +- Bump patch version + + +## [0.7.6] - 2021-03-31 + +### Features + +- J fu bfnormals (#7) + +Enable outflow bc in VoronoiFVM + +* Create BFaceNodes, BFaceNormals +* sparsematrix <-> adjacency handling +* Remove ExtendableSparse as Dependency +* Relax some type constraints for simplexgrid +* bump version + +- Oops: remove GridVisiualize from Project.toml + + +## [0.7.5] - 2021-03-30 + +### Features + +- Bump patch version, Allow for ExtendableSparse 0.4 + + +## [0.7.4] - 2021-01-12 + +### Features + +- Factored out plotting + + +## [0.7.3] - 2021-01-10 + +### Features + +- Fix typo (colstaert) +change alpha default for surfaces. + + +## [0.7.2] - 2021-01-09 + +### Features + +- Reorganization: GridVisualize as submodule + +- Renamed: +GridPlotContext -> GridVisualizer +gridplot -> visualize +SubPlotContext -> SubVis + +- More renames for passing test + +- Bump version + + +## [0.7.1] - 2021-01-09 + +### Features + +- Gridplot checks with VoronoiFVM + +* Detailed checks for plotting with VoronoiFVM + +* Pluto examples in experimental + + +## [0.7.0] - 2021-01-07 + +### Features + +- Renamed plot->gridplot, use AbstractPlotting >0.15 (#5) + +Renamed plot->gridplot, use AbstractPlotting >0.15 + + + +## [0.6.3] - 2021-01-06 + +### Features + +- Fix use of extrema in bbox + +- Color handling via Colors.jl and ColorSchemes.jl + +- Added rosetta.jl to experimental test examples + +- Save method for plot context + +- Lower expectation to coverage + +- Fix codecov + +- Fix codecov + +- Last developments before switching to AbstratPlotting 0.15 (#4) + +Color handling via Colors.jl and ColorSchemes.jl +In addition: + +* fix use of extrema in bbox + +* color handling via Colors.jl and ColorSchemes.jl + +* added rosetta.jl to experimental test examples + +* save method for plot context + + + +## [0.6.2] - 2021-01-01 + +### Features + +- Pluto tests, MeshCat (#3) + +* marching tets et al can directly write into GeometryBasics compatible arrays + +* add experimental meshcat implementation (3D only) + +* don't run plotting tests on apple + +- Bump version + + +## [0.6.1] - 2020-12-31 + +### Features + +- Assert non-empty pointlist in simplexgrid + +- 3D Makie plotting interaction via keyboard + +* sliders would eat up screen real estate +* middle mouse probably not available everywere +* up/down for fine moving and pgup/pgdown for coarse seems to be ok +* added title and status to 3d scene + +- New subplot handling working with PyPlot + +- Makie now running with multiscene + +- Fixed allocations in simplexgrid + +- Implementations (sometimes initial) for grid and grid,func in 1D, 2D, 3D + +* Support Makie, PyPlot, VTKView (VTKView without grid 1D) +* At least temporarily drop support of Plots + +- Subplot handling: examples, docs + +- Remove dependency on Observables + +- Added grid writing + +* fixed initializaion bug in tokenstream +* try to increase codecov + +- Don't use cleanup in tempname() + +- Fix definition of extrema + +- Try to increase coverage: +add PyPlot to test dependency, test pyplot plotting + +- Add project.toml for test + +- Try to set env for runtestes + +- Fix project.toml + + +## [0.6.0] - 2020-12-24 + +### Features + +- Trigger TagBot on issue_comment instead of cron: https://discourse.julialang.org/t/ann-required-updates-to-tagbot-yml/49249 + +- Add 3D tensorgrid creation + +- Documentation overhaul, fixed simplexgrid bug + + +## [0.5.8] - 2020-12-20 + +### Features + +- Use codecov.yml instead of switching off codecov + +- Bugfix in adjacency + +- Add test for subgrid + + +## [0.5.7] - 2020-12-14 + +### Features + +- Lots of small fixes + + +## [0.5.6] - 2020-12-12 + +### Features + +- Use backlight for isosurfaces and planes. + +Be sure to have https://github.com/JuliaPlots/GLMakie.jl/commit/05220480a3e79c254f538ba46a38d437598c874e +in GLMakie >=1.19 + +- Fix small glitches + version bump + + +## [0.5.5] - 2020-12-12 + +### Features + +- Figured out with how to have changing mesh and changing function at once, see +https://github.com/JuliaPlots/Makie.jl/issues/778#issuecomment-742397119 + +- First reasonable 3D function plotting + + +## [0.5.4] - 2020-12-09 + +### Features + +- Refactor plotting + +- generic mesh visibility extraction for grid plot moved from makie to common +- one loop for all materials. + +- First reasonable 3D Grid plots with PyPlot + +- Rotation kwargs (work only for pyplot) + + +## [0.5.3] - 2020-12-07 + +### Features + +- Rename ci + +- Added DOCUMENTER_KEY to TagBot.yml + +- Interactive Makie grid plot for 3D simplex grids + +- Remove coverage test from workflow for the time being + + +## [0.5.2] - 2020-12-05 + +### Features + +- Thank you travis and bye bye + +- Thank you travis and bye bye + +- removed .travis.yml + + +## [0.5.1] - 2020-12-04 + +### Features + +- Firsts steps to makie grid plotting + + +## [0.5.0] - 2020-12-04 + +### Features + +- Change edge plotting default to true + +- Relaxs type constraints for geomspace + +- First step to 3D grid visualization + +- Update readme & bump version + + +## [0.4.2] - 2020-10-24 + +### Features + +- Moved edge creation from VoronoiFVM + +This currently creates a dependency on ExtendableSparse which +should be replaced some time. + +- Don't print in show() methods! + +- Handle boundaries when creating bulk subgrid + +- Some fixes for pyplot in Pluto notebooks. + +Don't call PyPlot.show() and PyPlot.pause(), as this +must be handeled by the user. + +- Bfacemask! now allows to add new boundary facets in 2D + +- Fix show again + +- Fixing docs + +- V0.4.2 + +- Fix compat + + +## [0.4.1] - 2020-09-24 + +### Features + +- Documentation fix + + +## [0.4.0] - 2020-09-23 + +### Features + +- Plotting of GridFactory showing input and output (PyPlot) + +* first steps of Makie plotting + +- Rebuild of plotting architecture + +* dispatching via plotter type + +* PlotterContext holds state of plot, allowing reuse or update (e.g. for Makie), + see examples/plotlooptest.jl + +* First plots with Makie & WGLMakie + +- Introduce kwargs for plotting + +- Plotloop stuff + +- Fine tuned and commentes plotting stuff + +* Help mechanism for flags +* Test for two figure arrangements in one plot -> future layout stuff + +- Fix travis + +- Switch to travis-ci.com + +- Moving GridFactory to SimplexGridFactory.SimplexGridBuilder +(mainly for licensing reasons) + +- Removed dependency on Triangulate + +- Added MIT License + +- Mentioned accssibility of Triangle via SimplexGridFactory + +- Version 0.4.0 + + +## [0.3.0] - 2020-09-04 + +### Features + +- First working steps to GridFactory + +- Improved GridFactory + +Added Examples to docs + +- Git-added missing files + +- V0.3: added GridFactory, Examples + + +## [0.2.3] - 2020-07-17 + +### Features + +- Version 0.2.3 using Triangulate 0.5 + +- Fixed issue #1 + + +## [0.2.2] - 2020-05-01 + +### Features + +- Add [XYZ]Cordinates to grid if they have been there. +This allows rectangular grid plotting (e.g. with Plots) + +- Fixed some plotting, show(grid) + +- Patch version bump + + +## [0.2.1] - 2020-04-28 + +### Features + +- Temporarily remove macos from travis due to stalled service + +- Fix documentation + +* work around TYPEDSIGNATURES bug +* add typehierarchy to doc + +- Add typehierarchy.md + +- Patch version bump +* first version with working documentation on github + + +## [0.2.0] - 2020-04-28 + +### Features + +- Documentation overhaul + +- VoronoiFVM examples now running after renaming to ExtendableGrids + +- Base.show(grid) ceases to print arrays + +- Keys -> Base.keys + +- Updated compat + +- Updated compat + + +## [0.1.0] - 2020-04-25 + +### Features + +- Initialize with README + +- Added first files + +- Fixed README + +- First tests are working... + +- More comments, introduce FixedTargetAdjacency + +- First version of extendabele container idea + +- Containers.md + +- Fixed pyplot for boundary grid + +- Fixed error in generation + +- Improved formatting + comments + +- Modified ntargets etc. to num_targets etc. +added DocStringExtensions + +- Fixed getindex for CellTypes + +- First steps to interaction with VoronoiFVM + +- Working for 1D Examples in VoronoiFVM + +- Fixes for 2D VoronoiFVM + +- Sorted API + +- Version bump + +- Typos + +- More stuff moved over from VoronoiFVM.Grid + +- Version bump + +- Started Documenter stuff + +- Fixed vectorofconstants: unique + +- Version 0.1.5 + +- Restarting as ExtendableGrids + +- Typo + +- Replaced all occurences of XGrid + +- Add travis, tagbot + +- Modified README, badges + +- Add Test in Project.toml + +- Add Printf in Project.toml + +- Fixed compat... + + diff --git a/docs/src/changes.md b/docs/src/changes.md index f3e325a2..d39de2b4 100644 --- a/docs/src/changes.md +++ b/docs/src/changes.md @@ -1,1126 +1,4 @@ -# Changelog -## [1.9.0] - 2024-07-07 -- Add edge partitioning induced from cell partitioning -- Overhaul of partitioning API - -## [1.8.0] - 2024-06-24 -- Correct node partitioning -- extended sg file format v2.2 with partitioning info -- Recursive metis partitioning - -## [1.7.0] - 2024-06-17 -- Partitioning for multithreading -- Metis extension -- extended subgrid method (new argument 'support' can be `ON_CELLS`, `ON_BFACES`, `ON_FACES`) -- SubGrid type has now a parameter that knows the support relative to parent grid, removed BoundarySubGrid type -- removed `get_facegrid`, `get_bfacegrid`, `get_edgegrid` in `derived.jl` (that offer no new functionality compared to subgrid) -- fixed default behaviour for coordinatesystem and restricted 1D coordinate sorting to project = true - -## [1.6.1] - 2024-06-07 - -- Drop support of Julia 1.6. Minimum Julia version is 1.9 -- TetGen + Triangulate extensions -- png instead of svg in docs - -## [1.5.1] - 2024-05-06 -- Grid consistency check -- Gmsh 0.3 - -## [1.4.0] - 2024-03-21 - -### Features - -- Move binnedpointlist to ExtendableGrids - -- New grid glueing algorithm using BinnedPointList - -- Fix docs, test - -- Merge pull request #42 from j-fu/mvbinned - -Move binned pointlist over here and use it for glueing -- Update! function to trigger reinstantioation of grid components; instantiate of Volumes components and FaceNormals and EdgeTangents keep existing arrays. - -- Merge pull request #41 from chmerdon/master - -Reinstantiation of CellVolumes, FaceNormals etc. - -## [1.3.2] - 2024-03-08 - -### Features - -- Fix documentation, all docstrings in output - -- Update ci for apple silicon - -- Add docstrings for commongrids - -- Add Aqua.jl tests - -- SimplexGridFactory isn't differently licensed - -- Bump patch version - - -## [1.3.1] - 2024-02-20 - -### Features - -- Fix subgrid coordinate system for boundary grids (#38) - -* fix subgrid coordinate system for boundary grids - -* use ExampleJuggler v2 (no Pluto dependency due to extensions) - -## [1.3.0] - 2024-02-05 - -### Features - -- Merge branch 'master' of https://github.com/chmerdon/ExtendableGrids.jl - -- New grid components ParentGridRelation, FaceParents, CellParents, BFaceParents, -some of them are now directly set during subgrid or refinement routines -(todo: set BFaceParents also in refinements) - -- Small fix - -- Small fix - -- Added BFaceParents to all refinement routines and some tests - -- Renamed NodeInParent to NodeParents, added a deprecated warning on this - -- New grid components ParentGridRelation, FaceParents, CellParents, BFaceParents, -some of them are now directly set during subgrid or refinement routines -(todo: set BFaceParents also in refinements) - -- Small fix - -- Small fix - -- Added BFaceParents to all refinement routines and some tests - -- Renamed NodeInParent to NodeParents, added a deprecated warning on this - -- Merge branch 'master' of github.com:j-fu/ExtendableGrids.jl - - -## [1.2.3] - 2024-01-19 - -### Features - -- Fix for subgrid in case there is empty boundary data in the parent grid (or probably also when the subgrid lies completely in the interior) - -- Modified the subgrid+extrusion test a bit to test if a subgrid for a completely interior region works (and it only does with the previous modifications) - -- Fix for subgrid in case there is empty boundary data (#36) - -* fix for subgrid in case there is empty boundary data in the parent grid (or probably also when the subgrid lies completely in the interior) - -* modified the subgrid+extrusion test a bit to test if a subgrid for a completely interior region works (and it only does with the previous modifications) -- Bump patch version - - -## [1.2.2] - 2023-11-29 - -### Features - -- Add more gmsh stuff -* handle geo files -* allow for `simplexgrid("my.msh")` and `simplexgrid("my.geo")` -* allow for `write("my.msh",grid) -* file handling with gmsh initializes and finalizes - -- Bump version - - -## [1.2.1] - 2023-11-28 - -### Features - -- Bugfixes for gmsh extension - -* handle node tags properly -* add more examples from gmsh docs - - -## [1.2.0] - 2023-11-23 - -### Features - -- Gmsh extension3 (#34) - -* Update ExtendableGridsGmshExt.jl - -* Add the seal function - -Computes the boundary faces of an incomplete simplexgrid and adds them to it - -* simplexgrid + mixedgrid functions for the gmsh extension are defined - -* add tests with different types (of indices & coordinates) for gmsh Y ExtendableGrids - -* add gmsh geometry description test - -* Document the gmsh stuff ---------- - -Co-authored-by: Jürgen Fuhrmann -- Use ExampleJuggler (#35) - -* moved tests to examplejuggler - -* move documentation to examplejuggler -- Add gmsh example - -- Small readme+docs update - -- Add J. Taraz to author lists - - -## [1.1.0] - 2023-07-25 - -### Features - -- Update Project.toml - -change Project.toml to incorporate the extension -- Create ExtendableGridsGmshExt.jl -- Update ExtendableGridsGmshExt.jl - -upload the (gmsh-) extension code -- Update simplexgrid.jl - -include function definitions with implementations in the gmsh extension -- Gmsh-files for tests -- (g)msh-files for the test of the extension -- Delete sto_2d.msh -- Delete sto_3d.msh -- Update runtests.jl - -added the tests of the gmsh extension -- Update Project.toml - -add dependencies for the gmsh extension -- Update Project.toml -- Update runtests.jl -- Merge pull request #32 from jotaraz/master - -gmsh ext -- Add requires for 1.6 - -- Remove assignment to gms.model for Julia <1.9 - -- Remove dummy simplexgrid(module) - -- Bump version - -- Merge pull request #33 from j-fu/gmsh-extension2 - -add requires for 1.6 - -## [1.0.0] - 2023-07-22 - -### Features - -- GeometryGroups (#27) - -* new type CellGeometryGroups that collect all cells of same CellGeometry as ordered in UniqueCellGeometries - -* view for VariableTargetAdjacency, less allocation in FaceNodes for mixed geometries - ---------- - -Co-authored-by: Christian Merdon -- Allow non-leaf types in ElementGeometries - -- New type CellGeometryGroups that collect all cells of same CellGeometry as ordered in UniqueCellGeometries - -- Added also FaceGeometryGroups etc. and assembly helpers - -- Init BEdgeRegions with an array, so that test for bedgemask works again - -- GeometryGroups > AssemblyGroups - -- Some small corrections, view for VariableTargetAdjacency, less allocation in FaceNodes for mixed geometries - -- Some small improvements - -- Merge pull request #31 from j-fu/geometry_groups - -some small changes -- Merge branch 'master' into quadmeshes - -- Merge pull request #30 from j-fu/quadmeshes - -Prepare for quadrilateral and cuboidal elements -- Set cairomakie invisible in tests - -- Set version to 1.0 for better semver - - -## [0.9.17] - 2023-02-10 - -### Features - -- Fix print_tree calls - -- Sorting coordinates of 1D subgrids - -- Use CairoMakie for plotting tests & docs - -- Merge pull request #22 from j-fu/sort_1d_subgrids - -Sort 1d subgrids - -## [0.9.16] - 2022-11-30 - -### Features - -- Remove allocation regression in Julia 1.9 - return Matrices as local_celledgenodes etc. instead of adjoints - - -## [0.9.15] - 2022-10-22 - -### Features - -- Cleanup type handling for simplexgrid constructors, 0.9.15 - -* Fixes stackoverflow error when calling simplexgrid with arrays of different index types - -* Detect index types from CellNode arrays - -* replace collect_or_assign by convert - -* add `bregions`, `cellregion` constructor to tensor grid constructor - -* Version bump - -- Fix CI for 1.6 - -- Fix CI for 1.6 - again - - -## [0.9.14] - 2022-10-19 - -### Features - -- BFaceRegions in grid after uniform_refine are still VectorOfConstants if BFaceRegions in source grid has been VectorOfConstants - -- Introduce barrier in volume calculation (#19) - - -- Bump version - - -## [0.9.13] - 2022-09-13 - -### Features - -- Fix unit test for writevtk - -- Create Invalidations.yml (#16) - -* Create Invalidations.yml - -This is based on https://github.com/julia-actions/julia-invalidations. Adding such checks came up in https://discourse.julialang.org/t/potential-performance-regressions-in-julia-1-8-for-special-un-precompiled-type-dispatches-and-how-to-fix-them/86359. I suggest to add this check here since this package is widely used as a dependency. - -See also SciML/MuladdMacro.jl#26 and SciML/MuladdMacro.jl#29 -- Missing bracket (#18) - - -- Bump version, allow AbstractTrees 0.4 - - -## [0.9.12] - 2022-06-23 - -### Features - -- Piecewise linear interpolation between simplexgrids - - -## [0.9.11] - 2022-06-21 - -### Features - -- Speed up of hot loops in bfacemask! and cellmask! - - -## [0.9.10] - 2022-06-16 - -### Features - -- Bregion numbers can now be functions of the current region, or zero to erase - - -## [0.9.9] - 2022-06-16 - -### Features - -- Bugfix for 3D rect! - - -## [0.9.8] - 2022-06-15 - -### Features - -- Bump to 0.9.8 - missed some commits - - -## [0.9.7] - 2022-06-15 - -### Features - -- Fix superfluous corner triangles in subgrid generation - -- Added rect! to regionedit - place surface info into rectangular grid - - -## [0.9.6] - 2022-05-13 - -### Features - -- Added barycentric refinement for Tetrahedron3D and some tests for uniform and barycentric refinement - - -## [0.9.5] - 2022-03-27 - -### Features - -- Improve glue performance -* allow to restrict tested regions -* removed allocations in main loop - - -## [0.9.4] - 2022-03-24 - -### Features - -- Added FaceEdgeSigns, version bump - - -## [0.9.3] - 2022-03-23 - -### Features - -- Added function for writing grid structure to vtk_write (#12) - -* Added function for writing grid structure to io.jl - -The writing of the VTK files uses the WriteVTK.jl package. -Hence, it was added as dependency. In addition to the grid structure, -point, cell, or field data can be written to the file. - -* julia1.6 now required, added test (needs SHA hash comparison to test Project.toml) - -Co-authored-by: chmerdon <57663257+chmerdon@users.noreply.github.com> -- Update ci.yml - -update to new minimum julia version dependency -- Update Project.toml - -## [0.9.2] - 2022-03-22 - -### Features - -- Fix for node ordering in tensor grid constructor such that no negative cell volumes occur - - -## [0.9.1] - 2022-02-21 - -### Features - -- Some bugfixes for unionizing update, version bump - - -## [0.9.0] - 2022-02-18 - -### Features - -- Unionize abstract types (#13) - -This relies on the built-in union split of Julia which seems to have no union size constraint anymore. This may remove some allocations... - -* Use "ElementGeomtries" -- union of Geometry leaf types -- as eltype for CellGeometries,BFaceGeomtries -* Similar with CoordinateSystems. -* fixed UniqueBFaceGeometries etc, reduced allocations in ItemVolumes instantiations (dispatch on CoordinateSystem seems to cause remaining allocations) -* use SVector for storing intermediate vector data -* Added more typestable getindex methods. -* use length of cx in cellfinder instead of x as length of x might not match) - -Co-authored-by: Christian Merdon - -- Version bump - - -## [0.8.11] - 2021-12-06 - -### Features - -- Glue and simplexgrid(xygrid, zcoord) now use Cint indices. - - -## [0.8.10] - 2021-11-13 - -### Features - -- Test against tol for lmismatch in geomspace - - -## [0.8.9] - 2021-11-10 - -### Features - -- Fix missing CoordinateSystem instantiation for subgrid - - -## [0.8.8] - 2021-11-03 - -### Features - -- Volume of Vertex0D set to 1 - -- Switch off plotting testset on windows system for now - -- Version bump - -## [0.8.7] - 2021-10-21 - -### Features - -- Added ringsector2d - - -## [0.8.6] - 2021-10-21 - -### Features - -- Modify 2D x Z tensorproduct API: make cell, bottom and top regions from -offsets of 2D cellregions - -- Bfacemask! for 3D, introduce allow_new flag - - -## [0.8.5] - 2021-10-20 - -### Features - -- Tensor product grid2d x coordZ - - -## [0.8.4] - 2021-10-20 - -### Features - -- Docstring for VoronoiFaceCenters - -- Add glue method for grids - -- Removed Base.RefValues from L2GTransformer struct and made it mutable (immutability seems to give no benefit here) - -- Merge branch 'master' of github.com:j-fu/ExtendableGrids.jl - - -## [0.8.3] - 2021-10-13 - -### Features - -- Add tests for geomspace, make assertion warnings more clear - -- Don't use yet X[begin] - -- Some more geomspace tweaks - -- Calculate VoronoiFaceCenters, take in tricircumcenter! - -- Add voronoi.jl - - -## [0.8.2] - 2021-10-07 - -### Features - -- Start to sort out documentation - -- Remove plotting test - -- Less allocations in instantiation of EdgeNodes - -- Less allocations in instantiation of FaceNormals and EdgeTangents, converted some Float64 to Tc - -- Some tweaks for geomspace - -- Merge branch 'master' of github.com:j-fu/ExtendableGrids.jl - -- Merge branch 'master' of https://github.com/j-fu/ExtendableGrids.jl - -- Reduced allocations in all mesh refinements, last remnants of GridAdjacencyTypes erased and replaced by Adjacency - - -## [0.8.1] - 2021-10-06 - -### Features - -- Nnodes_for_geometry/nfaces_for_geometry/nedges_for_geometry erased/merged into num_nodes/num_faces/num_edges that are now residing in shape_specs.jl, edges are always Edge1D (adjusted instantiation of EdgeNodes in derived.jl accordingly), erased GridAdjacencyTypes, added enum consistency tests also for Parallelepiped3D - -- Activated L2GTransfer, AssemblyTypes, CellFinder (moved from GradientRobustMultiPhysics) and respective tests; renamed BFaces to BFaceFaces and BEdges to BEdgeEdges - -- Version 0.8.1 - -- Ch Merdon as author - -- Set EdgeGeometries in instantiation of EdgesNodes in 1D and 2D - -- Merge branch 'master' of https://github.com/j-fu/ExtendableGrids.jl - -- Merge branch 'master' of github.com:j-fu/ExtendableGrids.jl - - -## [0.8.0] - 2021-10-05 - -### Features - -- Phase 1 Transfer of gridstuff from GradienRobustMultiPhysics (#11) - -* Phase 1 Transfer of gridstuff from GradienRobustMultiPhysics - -- Bump version - - -## [0.7.9] - 2021-07-09 - -### Features - -- Added boundary edge regions (#10) - -* Added boundary edge regions - -* Extended constructor for simplexgrid - -* Fixed missing assignment of boundary edge node adjacency - -Co-authored-by: Matthias Liero -- Bump version - - -## [0.7.8] - 2021-07-02 - -### Features - -- Bugfix for BFaceCells, relax parameter types in simplexgrid() constructor - - -## [0.7.7] - 2021-06-15 - -### Features - -- Type-annotated some methods - -- Compute adjacency between boundary faces and edges. (#8) - -* Compute adjacency between boundary faces and edges. - -* Added missing methods - -Co-authored-by: Matthias Liero -- Merge branch 'master' of github.com:j-fu/ExtendableGrids.jl - -- Bump patch version - - -## [0.7.6] - 2021-03-31 - -### Features - -- J fu bfnormals (#7) - -Enable outflow bc in VoronoiFVM - -* Create BFaceNodes, BFaceNormals -* sparsematrix <-> adjacency handling -* Remove ExtendableSparse as Dependency -* Relax some type constraints for simplexgrid -* bump version - -- Oops: remove GridVisiualize from Project.toml - - -## [0.7.5] - 2021-03-30 - -### Features - -- Bump patch version, Allow for ExtendableSparse 0.4 - - -## [0.7.4] - 2021-01-12 - -### Features - -- Factored out plotting - - -## [0.7.3] - 2021-01-10 - -### Features - -- Fix typo (colstaert) -change alpha default for surfaces. - - -## [0.7.2] - 2021-01-09 - -### Features - -- Reorganization: GridVisualize as submodule - -- Renamed: -GridPlotContext -> GridVisualizer -gridplot -> visualize -SubPlotContext -> SubVis - -- More renames for passing test - -- Bump version - - -## [0.7.1] - 2021-01-09 - -### Features - -- Gridplot checks with VoronoiFVM - -* Detailed checks for plotting with VoronoiFVM - -* Pluto examples in experimental - - -## [0.7.0] - 2021-01-07 - -### Features - -- Renamed plot->gridplot, use AbstractPlotting >0.15 (#5) - -Renamed plot->gridplot, use AbstractPlotting >0.15 - - - -## [0.6.3] - 2021-01-06 - -### Features - -- Fix use of extrema in bbox - -- Color handling via Colors.jl and ColorSchemes.jl - -- Added rosetta.jl to experimental test examples - -- Save method for plot context - -- Lower expectation to coverage - -- Fix codecov - -- Fix codecov - -- Last developments before switching to AbstratPlotting 0.15 (#4) - -Color handling via Colors.jl and ColorSchemes.jl -In addition: - -* fix use of extrema in bbox - -* color handling via Colors.jl and ColorSchemes.jl - -* added rosetta.jl to experimental test examples - -* save method for plot context - - - -## [0.6.2] - 2021-01-01 - -### Features - -- Pluto tests, MeshCat (#3) - -* marching tets et al can directly write into GeometryBasics compatible arrays - -* add experimental meshcat implementation (3D only) - -* don't run plotting tests on apple - -- Bump version - - -## [0.6.1] - 2020-12-31 - -### Features - -- Assert non-empty pointlist in simplexgrid - -- 3D Makie plotting interaction via keyboard - -* sliders would eat up screen real estate -* middle mouse probably not available everywere -* up/down for fine moving and pgup/pgdown for coarse seems to be ok -* added title and status to 3d scene - -- New subplot handling working with PyPlot - -- Makie now running with multiscene - -- Fixed allocations in simplexgrid - -- Implementations (sometimes initial) for grid and grid,func in 1D, 2D, 3D - -* Support Makie, PyPlot, VTKView (VTKView without grid 1D) -* At least temporarily drop support of Plots - -- Subplot handling: examples, docs - -- Remove dependency on Observables - -- Added grid writing - -* fixed initializaion bug in tokenstream -* try to increase codecov - -- Don't use cleanup in tempname() - -- Fix definition of extrema - -- Try to increase coverage: -add PyPlot to test dependency, test pyplot plotting - -- Add project.toml for test - -- Try to set env for runtestes - -- Fix project.toml - - -## [0.6.0] - 2020-12-24 - -### Features - -- Trigger TagBot on issue_comment instead of cron: https://discourse.julialang.org/t/ann-required-updates-to-tagbot-yml/49249 - -- Add 3D tensorgrid creation - -- Documentation overhaul, fixed simplexgrid bug - - -## [0.5.8] - 2020-12-20 - -### Features - -- Use codecov.yml instead of switching off codecov - -- Bugfix in adjacency - -- Add test for subgrid - - -## [0.5.7] - 2020-12-14 - -### Features - -- Lots of small fixes - - -## [0.5.6] - 2020-12-12 - -### Features - -- Use backlight for isosurfaces and planes. - -Be sure to have https://github.com/JuliaPlots/GLMakie.jl/commit/05220480a3e79c254f538ba46a38d437598c874e -in GLMakie >=1.19 - -- Fix small glitches + version bump - - -## [0.5.5] - 2020-12-12 - -### Features - -- Figured out with how to have changing mesh and changing function at once, see -https://github.com/JuliaPlots/Makie.jl/issues/778#issuecomment-742397119 - -- First reasonable 3D function plotting - - -## [0.5.4] - 2020-12-09 - -### Features - -- Refactor plotting - -- generic mesh visibility extraction for grid plot moved from makie to common -- one loop for all materials. - -- First reasonable 3D Grid plots with PyPlot - -- Rotation kwargs (work only for pyplot) - - -## [0.5.3] - 2020-12-07 - -### Features - -- Rename ci - -- Added DOCUMENTER_KEY to TagBot.yml - -- Interactive Makie grid plot for 3D simplex grids - -- Remove coverage test from workflow for the time being - - -## [0.5.2] - 2020-12-05 - -### Features - -- Thank you travis and bye bye - -- Thank you travis and bye bye - -- removed .travis.yml - - -## [0.5.1] - 2020-12-04 - -### Features - -- Firsts steps to makie grid plotting - - -## [0.5.0] - 2020-12-04 - -### Features - -- Change edge plotting default to true - -- Relaxs type constraints for geomspace - -- First step to 3D grid visualization - -- Update readme & bump version - - -## [0.4.2] - 2020-10-24 - -### Features - -- Moved edge creation from VoronoiFVM - -This currently creates a dependency on ExtendableSparse which -should be replaced some time. - -- Don't print in show() methods! - -- Handle boundaries when creating bulk subgrid - -- Some fixes for pyplot in Pluto notebooks. - -Don't call PyPlot.show() and PyPlot.pause(), as this -must be handeled by the user. - -- Bfacemask! now allows to add new boundary facets in 2D - -- Fix show again - -- Fixing docs - -- V0.4.2 - -- Fix compat - - -## [0.4.1] - 2020-09-24 - -### Features - -- Documentation fix - - -## [0.4.0] - 2020-09-23 - -### Features - -- Plotting of GridFactory showing input and output (PyPlot) - -* first steps of Makie plotting - -- Rebuild of plotting architecture - -* dispatching via plotter type - -* PlotterContext holds state of plot, allowing reuse or update (e.g. for Makie), - see examples/plotlooptest.jl - -* First plots with Makie & WGLMakie - -- Introduce kwargs for plotting - -- Plotloop stuff - -- Fine tuned and commentes plotting stuff - -* Help mechanism for flags -* Test for two figure arrangements in one plot -> future layout stuff - -- Fix travis - -- Switch to travis-ci.com - -- Moving GridFactory to SimplexGridFactory.SimplexGridBuilder -(mainly for licensing reasons) - -- Removed dependency on Triangulate - -- Added MIT License - -- Mentioned accssibility of Triangle via SimplexGridFactory - -- Version 0.4.0 - - -## [0.3.0] - 2020-09-04 - -### Features - -- First working steps to GridFactory - -- Improved GridFactory - -Added Examples to docs - -- Git-added missing files - -- V0.3: added GridFactory, Examples - - -## [0.2.3] - 2020-07-17 - -### Features - -- Version 0.2.3 using Triangulate 0.5 - -- Fixed issue #1 - - -## [0.2.2] - 2020-05-01 - -### Features - -- Add [XYZ]Cordinates to grid if they have been there. -This allows rectangular grid plotting (e.g. with Plots) - -- Fixed some plotting, show(grid) - -- Patch version bump - - -## [0.2.1] - 2020-04-28 - -### Features - -- Temporarily remove macos from travis due to stalled service - -- Fix documentation - -* work around TYPEDSIGNATURES bug -* add typehierarchy to doc - -- Add typehierarchy.md - -- Patch version bump -* first version with working documentation on github - - -## [0.2.0] - 2020-04-28 - -### Features - -- Documentation overhaul - -- VoronoiFVM examples now running after renaming to ExtendableGrids - -- Base.show(grid) ceases to print arrays - -- Keys -> Base.keys - -- Updated compat - -- Updated compat - - -## [0.1.0] - 2020-04-25 - -### Features - -- Initialize with README - -- Added first files - -- Fixed README - -- First tests are working... - -- More comments, introduce FixedTargetAdjacency - -- First version of extendabele container idea - -- Containers.md - -- Fixed pyplot for boundary grid - -- Fixed error in generation - -- Improved formatting + comments - -- Modified ntargets etc. to num_targets etc. -added DocStringExtensions - -- Fixed getindex for CellTypes - -- First steps to interaction with VoronoiFVM - -- Working for 1D Examples in VoronoiFVM - -- Fixes for 2D VoronoiFVM - -- Sorted API - -- Version bump - -- Typos - -- More stuff moved over from VoronoiFVM.Grid - -- Version bump - -- Started Documenter stuff - -- Fixed vectorofconstants: unique - -- Version 0.1.5 - -- Restarting as ExtendableGrids - -- Typo - -- Replaced all occurences of XGrid - -- Add travis, tagbot - -- Modified README, badges - -- Add Test in Project.toml - -- Add Printf in Project.toml - -- Fixed compat... - - +````@eval +using Markdown +Markdown.parse(read("../../CHANGELOG.md",String)) +````