PR-validation.yml

name: PR validation
on:
  pull_request:
    types: [synchronize, opened, reopened, edited]
    branches:
      - master
jobs:
  reporting:
    runs-on: ubuntu-22.04
    steps:
      - name: Report workflow details
        run: |
          echo "Repository ${{ github.repository }}."
          echo "Trigger ref ${{ github.ref }}, base-ref ${{ github.base_ref }}, head_ref ${{ github.head_ref }}."
      - name: Check out repository code
        uses: actions/checkout@v3
      - name: Report files updated in PR
        run: |
          git fetch -q origin ${{ github.base_ref }} ${{ github.head_ref }}
          git diff --name-only origin/${{ github.base_ref }} origin/${{ github.head_ref }}
  test-api:
    permissions:
      id-token: write # Required for authentication through OIDC to AWS
    runs-on: ubuntu-22.04
    steps:
      - name: Check out repository code
        uses: actions/checkout@v3
      - name: Set up JDK 8
        uses: actions/setup-java@v3
        with:
          java-version: '8'
          distribution: 'temurin'
      - name: Install clojure and clojure cli (clj)
        uses: DeLaGuardo/setup-clojure@12.3
        with:
          cli: 1.10.1.536
      - name: Report runtime details
        run: |
          echo "Github runner OS: ${{ runner.os }}"
      - name: AWS credentials configuration
        uses: aws-actions/configure-aws-credentials@v4
        with:
          role-to-assume: ${{secrets.GH_ACTIONS_AWS_ROLE}}
          role-session-name: gh-actions-${{github.run_id}}.${{github.run_number}}.${{github.run_attempt}}-test-api
          aws-region: us-east-1
          mask-aws-account-id: true
      - name: Download and install Datomic Pro
        run: |
          aws s3 cp s3://wormbase/datomic-pro/distro/datomic-pro-1.0.6165.zip ./
          unzip datomic-pro-1.0.6165.zip
          cd datomic-pro-1.0.6165/
          bin/maven-install
      - name: Generate pom file
        run: |
          clojure -Spom
      - name: Run Integration tests
        run: |
          make run-tests APP_PROFILE=dev
  build-and-run-container:
    permissions:
      id-token: write # Required for authentication through OIDC to AWS
    runs-on: ubuntu-22.04
    steps:
      - name: Check out repository code
        uses: actions/checkout@v3
      - name: AWS credentials configuration
        uses: aws-actions/configure-aws-credentials@v4
        with:
          role-to-assume: ${{secrets.GH_ACTIONS_AWS_ROLE}}
          role-session-name: gh-actions-${{github.run_id}}.${{github.run_number}}.${{github.run_attempt}}-test-api
          aws-region: us-east-1
          mask-aws-account-id: true
      - name: Build container image
        run: |
          make build-docker-imagedock
      - name: Launch test instance of container (connecting to test env DB)
        run: |
          make run-docker PROJ_NAME=wormbase-names-test
          sleep 60
      - name: Test API accessability
        id: test-api-accessability
        continue-on-error: true
        run: |
          curl -I http://localhost:3000/api/auth/identity
      - name: Test UI accessability
        id: test-ui-accessability
        continue-on-error: true
        run: |
          curl -I http://localhost:3000/
      - name: Report container logs if either accessibility test fails
        if: ${{ steps.test-ui-accessability.outcome == 'failure' || steps.test-api-accessability.outcome == 'failure' }}
        run: |
          docker logs wormbase-names-test