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Having problem to install the package #124

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khojandin opened this issue May 8, 2023 · 1 comment
Open

Having problem to install the package #124

khojandin opened this issue May 8, 2023 · 1 comment

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@khojandin
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I'm trying to install the package (using RStudio) but getting this error.
Downloading GitHub repo YosefLab/VISION@HEAD
These packages have more recent versions available.
It is recommended to update all of them.
Which would you like to update?

1: All
2: CRAN packages only
3: None
4: httpuv (1.6.9 -> 1.6.10) [CRAN]

Enter one or more numbers, or an empty line to skip updates: 1
httpuv (1.6.9 -> 1.6.10) [CRAN]
Installing 1 packages: httpuv

There is a binary version available but the source version is later:
binary source needs_compilation
httpuv 1.6.9 1.6.10 TRUE

installing the source package ‘httpuv’

trying URL 'https://cran.rstudio.com/src/contrib/httpuv_1.6.10.tar.gz'
Content type 'application/x-gzip' length 1875497 bytes (1.8 MB)
downloaded 1.8 MB

  • installing source package 'httpuv' ...
    ** package 'httpuv' successfully unpacked and MD5 sums checked
    ERROR: cannot remove earlier installation, is it in use?
  • removing 'C:/Users/NiloufarKhojandi/AppData/Local/Programs/R/R-4.3.0/library/httpuv'
  • restoring previous 'C:/Users/NiloufarKhojandi/AppData/Local/Programs/R/R-4.3.0/library/httpuv'
    Warning in file.copy(lp, dirname(pkgdir), recursive = TRUE, copy.date = TRUE) :
    problem copying C:\Users\NiloufarKhojandi\AppData\Local\Programs\R\R-4.3.0\library\00LOCK-httpuv\httpuv\libs\x64\httpuv.dll to C:\Users\NiloufarKhojandi\AppData\Local\Programs\R\R-4.3.0\library\httpuv\libs\x64\httpuv.dll: Permission denied

The downloaded source packages are in

‘C:\Users\NiloufarKhojandi\AppData\Local\Temp\RtmpGm7dIC\downloaded_packages’
── R CMD build ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
✔ checking for file 'C:\Users\NiloufarKhojandi\AppData\Local\Temp\RtmpGm7dIC\remotesa77c10e27c12\YosefLab-VISION-8dc5c4e/DESCRIPTION' ...
─ preparing 'VISION': (3.7s)
✔ checking DESCRIPTION meta-information ...
─ cleaning src
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
Removed empty directory 'VISION/vignettes/web_only'
Omitted 'LazyData' from DESCRIPTION
─ building 'VISION_3.0.1.tar.gz'

  • installing source package 'VISION' ...
    ** using staged installation
    ** libs
    g++ -std=gnu++17 -I"C:/Users/NILOUF1/AppData/Local/Programs/R/R-431.0/include" -DNDEBUG -DROUT -lgopm -I'C:/Users/NiloufarKhojandi/AppData/Local/Programs/R/R-4.3.0/library/Rcpp/include' -I"c:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Geary.cpp -o Geary.o
    /bin/sh: line 1: g++: command not found
    make: *** [C:/Users/NILOUF1/AppData/Local/Programs/R/R-431.0/etc/x64/Makeconf:272: Geary.o] Error 127
    ERROR: compilation failed for package 'VISION'
  • removing 'C:/Users/NiloufarKhojandi/AppData/Local/Programs/R/R-4.3.0/library/VISION'
    Warning messages:
    1: In i.p(...) : installation of package ‘httpuv’ had non-zero exit status
    2: In i.p(...) :
    installation of package ‘C:/Users/NILOUF~1/AppData/Local/Temp/RtmpGm7dIC/filea77c69b64056/VISION_3.0.1.tar.gz’ had non-zero exit status
@Andre75952
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I met this problem too.Installing this package after updating my R to 4.3.0,the same error came up.During I searching for help,I noticed the sentence "g++ :command not found".It seems that this error caused by lower-version Rtools.After I installing new version,the error was done.

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