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Creating a Vision object from SeuratV5 object #135

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shp62 opened this issue Aug 7, 2024 · 0 comments
Open

Creating a Vision object from SeuratV5 object #135

shp62 opened this issue Aug 7, 2024 · 0 comments

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@shp62
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shp62 commented Aug 7, 2024

Hello,

Sorry if this is a very basic question but I am trying to make a Vision object from a SeuratV5 object

`signatures <- c("mh.all.v2023.2.Mm.symbols.gmt")

vision.obj <- Vision(seu.object, signatures = signatures)`

and I get the following error:
Importing counts from obj[["RNA"]]@CountS ...
Normalizing to counts per 10,000...
Error in .local(data, ...) :
no slot of name "counts" for this object of class "Assay5"

I believe this is because of the new seurat object data structure but I don't know how to point the function to the layer

Thank you!

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