From dd5ef52d1f267881f3d6e465332446279f981320 Mon Sep 17 00:00:00 2001
From: Zilong-Li <zimusen94@gmail.com>
Date: Sat, 21 Dec 2024 11:27:54 +0100
Subject: [PATCH] fix symbolic link error on windows

---
 configure                 | 2 ++
 src/htslib-1.21/configure | 2 +-
 2 files changed, 3 insertions(+), 1 deletion(-)

diff --git a/configure b/configure
index c8a40c3..30f9008 100755
--- a/configure
+++ b/configure
@@ -7,6 +7,8 @@ set -e
 HTSLIB_DIR="src/htslib-1.21"
 echo "Configuring HTSlib in $HTSLIB_DIR"
 cd $HTSLIB_DIR
+## copy file instead of symbolic linking
+cp htscodecs_bundled.mk htscodecs.mk 
 ./configure CFLAGS="-O2 -fPIC" 
     
 make libhts.a
diff --git a/src/htslib-1.21/configure b/src/htslib-1.21/configure
index fc73d48..8dfc180 100755
--- a/src/htslib-1.21/configure
+++ b/src/htslib-1.21/configure
@@ -6952,7 +6952,7 @@ fi
 
 ac_config_files="$ac_config_files config.mk htslib.pc.tmp:htslib.pc.in"
 
-ac_config_links="$ac_config_links htscodecs.mk:$selected_htscodecs_mk"
+# ac_config_links="$ac_config_links htscodecs.mk:$selected_htscodecs_mk"
 
 
 if test "$srcdir" != .; then