From 7eea0ca3ad3461ad03f53a41d3b6b71d804e3f07 Mon Sep 17 00:00:00 2001 From: arpanda Date: Mon, 22 Jul 2024 11:55:46 -0500 Subject: [PATCH] Test python versions --- .github/workflows/python-test.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/python-test.yml b/.github/workflows/python-test.yml index 8d12acf..e64242f 100644 --- a/.github/workflows/python-test.yml +++ b/.github/workflows/python-test.yml @@ -62,7 +62,7 @@ jobs: run: | cnvpytor -root test.pytor -pileup /mnt/gcs-bucket/bam/NA12877_S1.bam -v d - - name: run cnvpytor his, baf, call combined + - name: run cnvpytor his, baf run: | cnvpytor -root test.pytor -his 100000 -v d cnvpytor -root test.pytor -baf 100000 -v d @@ -77,7 +77,7 @@ jobs: md5sum output_2D.tsv [ "$(md5sum output_2D.tsv | awk '{ print $1 }')" == "c7a07af67cb38337f5df012cef304e66" ] && echo PASS || echo FAIL - - name: run cnvpytor call meanShift + - name: run cnvpytor meanShift call run: | cnvpytor -root test.pytor -partition 100000 -v d cnvpytor -root test.pytor -call 100000 -v d > output_meanShift.tsv