Output of print merged_calls (tsv)

[shaze]

Dear team,

I'm trying to workout the output of print merged_calls to a TSV file. I have tried to read the code and I thought I understood it but a more careful look shows I don't understand it. You have examples from an excel spreadsheet but I need to gave this in TSV format for downstream processing

My question is what the numbers in the list at the end of each line are.. I had thought that they were the indices of the samples with the call but this doesn't look right.

Here an extract from a line I have. I have similar question about duplications but let's start with this. How do I interpret the row after the length?

deletion        chr1:23942001-23966000  24000   0.94    0.79    0.92    0.95    0.93    0.94    0.92    0.97    0.85    0.91    1.07    1.04    1.05 ....  [1, 2, 3, 5, 7, 9, 12, 14, 17,...]

Many thanks

Scott