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LICENSE
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CIVET release (July 2019)
Licensing information
------
Civet core
Civet, Release 1.0 (c) 2019, see table below for list of copyright
holders (the "Software").
The Software remains the property of the copyright holders.
The Software is distributed "AS IS" under this Licence solely for
non-commercial use in the hope that it will be useful, but the
copyright holders make clear that no condition is made or to be implied,
nor is any warranty given or to be implied, as to the accuracy of the
Software, or that it will be suitable for any particular purpose or for
use under any specific conditions. Furthermore, the copyright holders
disclaim all responsibility for the use which is made of the Software.
They further disclaim any liability for the outcomes arising from using
the Software.
The Licensee agrees to indemnify the copyright holders and hold the
Copyright holders harmless from and against any and all claims, damages
and liabilities asserted by third parties (including claims for
negligence) which arise directly or indirectly from the use of the
Software or the sale of any products based on the Software.
No part of the Software may be reproduced, modified, transmitted or
transferred in any form or by any means, electronic or mechanical,
without the express permission of the copyright holders. Permission is
not required if the said reproduction, modification, transmission or
transference is done without financial return, the conditions of this
Licence are imposed upon the receiver of the product, and all original
and amended source code is included in any transmitted product. You may
be held legally responsible for any copyright infringement that is
caused or encouraged by your failure to abide by these terms and
conditions.
You are not permitted under this Licence to use this Software
commercially. Use for which any financial return is received shall be
defined as commercial use, and includes (1) integration of all or part
of the source code or the Software into a product for sale or license
by or on behalf of Licensee to third parties or (2) use of the Software
or any derivative of it for research with the final aim of developing
software products for sale or license to a third party or (3) use of
the Software or any derivative of it for research with the final aim of
developing non-software products for sale or license to a third party,
or (4) use of the Software to provide any service to an external
organisation for which payment is received. If you are interested in
using the Software commercially, please contact Alan C. Evans to
negotiate a licence. Contact details are: [email protected]
Software components Copyright
civet Alan C. Evans, David MacDonald, Jason Lerch, Claude Lepage
arguments Alan C. Evans, Jonathan Harlap
bicpl Alan C. Evans, David MacDonald
classify Alan C. Evans, Vasken Kollokian
conglomerate Alan C. Evans, David MacDonald
cortex_area Alan C. Evans, Claude Lepage
cortical_surface Alan C. Evans, David MacDonald
ebtks Alan C. Evans, Alex Zijdenbos
Getopt-Tabular Alan C. Evans, Greg Ward
ILT Alan C. Evans, David MacDonald
inormalize Alan C. Evans, Alex Zijdenbos
minc Alan C. Evans, Peter Neelin, Dave MacDonald
mni_autoreg Alan C. Evans, Louis Collins, Greg Ward
mni_m4 Alan C. Evans, Jason Lerch
mni_perllib Alan C. Evans, Greg Ward
N3 Alan C. Evans, John Sled
PMP Alan C. Evans, Jason Lerch
pve Alan C. Evans, Jussi Tohka
ray_trace Alan C. Evans, David MacDonald, Jason Lerch
surface-extraction Alan C. Evans, David MacDonald, June Sik Kim
Other packages included in the release:
The aggregate Civet release includes the following packages: mincbet
(copyright: Alan C. Evans, Claude Lepage, Andrew Janke) & mni_surfreg
(copyright: Alan C. Evans, Oliver Lyttelton, Steve Robbins, Maxime
Boucher), which are released under the terms of the GPLv2.0 licence
(http://www.gnu.org/licenses/old-licenses/gpl-2.0.html). Mincbet is a
minc adaptation of FSL bet version 1.0 by Stephen Smith (University of
Oxford).
The aggregate Civet release also includes the following packages:
oobicpl (copyright: Alan C. Evans, Jason Lerch, Steve Robbins) and
laplacian_thickness (copyright: Alan C. Evans, Jason Lerch) which are
released under the LGPLv2.1 licence
(https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html).
The aggregate Civet release also includes the following external
packages, which are available under different licences: Netcdf (v3.6.1),
Hdf5 (v1.8.8), Netpbm (v10.35.94), PCRE (v7.8), Boost (v1.64.0),
PCRE++ (v0.9.5), CGAL (v3.3.1), GSL (v1.8), and data models.
Licences for each package are indicated with the release and a summary
of the licensing information is provided below:
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
Netcdf, Hdf5, Netpbm, PCRE, Boost, Data models
Licences vary a little in their wording (see full licenses for each
package with the release), but provide the following re-use permissions
(and see sections below the license for copyright and disclaimers for
each):
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
1. Redistributions of source code must retain the following copyright
notices, this list of conditions and the following disclaimers.
2. Redistributions in binary form must reproduce the following copyright
notices, this list of conditions and the following disclaimers in the
documentation and/or other materials provided with the distribution.
3. Neither the name of the copyright holder nor the names of its
contributors may be used to endorse or promote products derived from
this software without specific prior written permission.
(for Boost: unless such copies or derivative works are solely in the
form of machine-executable object code generated by a source language
processor.)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Netcdf
Copyright 2018 Unidata
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED
TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Hdf5
HDF5 (Hierarchical Data Format 5) Software Library and Utilities
Copyright (c) 2006-2018, The HDF Group.
NCSA HDF5 (Hierarchical Data Format 5) Software Library and Utilities
Copyright (c) 1998-2006, The Board of Trustees of the University of
Illinois.
All rights reserved.
DISCLAIMER:
THIS SOFTWARE IS PROVIDED BY THE HDF GROUP AND THE CONTRIBUTORS "AS IS"
WITH NO WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED. IN NO EVENT
SHALL THE HDF GROUP OR THE CONTRIBUTORS BE LIABLE FOR ANY DAMAGES
SUFFERED BY THE USERS ARISING OUT OF THE USE OF THIS SOFTWARE, EVEN IF
ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
You are under no obligation whatsoever to provide any bug fixes, patches,
or upgrades to the features, functionality or performance of the source
code ("Enhancements") to anyone; however, if you choose to make your
Enhancements available either publicly, or directly to The HDF Group,
without imposing a separate written license agreement for such
Enhancements, then you hereby grant the following license: a
non-exclusive, royalty-free perpetual license to install, use, modify,
prepare derivative works, incorporate into other computer software,
distribute, and sublicense such enhancements or derivative works
thereof, in binary and source code form.
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Netpbm
Link to copyright summary & disclaimers:
http://netpbm.svn.code.sourceforge.net/p/netpbm/code/trunk/doc/copyright_summary
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
PCRE
PCRE is a library of functions to support regular expressions whose
syntax and semantics are as close as possible to those of the Perl 5
language.
The basic library functions are written in C and are freestanding. Also
included in the distribution is a set of C++ wrapper functions.
THE BASIC LIBRARY FUNCTIONS
---------------------------
Written by: Philip Hazel
Email local part: ph10
Email domain: cam.ac.uk
University of Cambridge Computing Service,
Cambridge, England.
Copyright (c) 1997-2008 University of Cambridge
All rights reserved.
THE C++ WRAPPER FUNCTIONS
-------------------------
Contributed by: Google Inc.
Copyright (c) 2007-2008, Google Inc.
All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS
IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER
OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Boost
Boost Software License - Version 1.0 - August 17th, 2003
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, TITLE AND
NON-INFRINGEMENT. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR ANYONE
DISTRIBUTING THE SOFTWARE BE LIABLE FOR ANY DAMAGES OR OTHER LIABILITY,
WHETHER IN CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Data models
Copyright (C) 1993-2009 Louis Collins, McConnell Brain Imaging Centre,
Montreal Neurological Institute, McGill University.
The authors and McGill University make no representations about the
suitability of this software for any purpose. It is provided "as is"
without express or implied warranty. The authors are not responsible
for any data loss, equipment damage, property loss, or injury to
subjects or patients resulting from the use or misuse of this software
package.
If the ADNI model is used, cite:
Fonov, V., Coupe, P., Eskildsen, S., Collins, L., and The Alzheimers's
Disease Neuroimaging Initiative (2011). Atrophy specific MRI brain
template for Alzheimer's disease and Mild Cognitive Impairment.
Alzheimer's Association International Conference, July 2011, France. 7
(4), pp. S58, 2011.
https://hal.archives-ouvertes.fr/hal-00645521
https://drive.google.com/file/d/0B2WB9sZf0qcZTzUxZDU1QWRJRVE/view
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
Other external packages: PCRE++, CGAL, GSL
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
PCRE++
GNU LGPLv2.1 licence
(https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
CGAL
See https://www.cgal.org/license.html (QPL/GPL/LGPL)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
GSL
GNU GPLv2.0 licence
(http://www.gnu.org/licenses/old-licenses/gpl-2.0.html)