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VariantSpark Hail Interface #96

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ArashBayatDev opened this issue Feb 8, 2019 · 1 comment
Open

VariantSpark Hail Interface #96

ArashBayatDev opened this issue Feb 8, 2019 · 1 comment
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@ArashBayatDev
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When using VariantSpark interface for Hail to run important analysis, VariantSpark expect to have exactly one allele in REF and ALT field. If there was any issue (some dataset have . in the ALT field) the process fails but it does not report which variant causing the error. So it is difficult for user to Understand and fix the problem.

I suggest to report the offending line when loading data fails to complete.
@rocreguant
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Will implement a warning if the VCF is not bi-allelic.

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@rocreguant @ArashBayatDev