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Hi,
First time running the pySCENIC pipeline, and would like to export the loom file but having an issue when running export2loom(), Erro message is: AttributeError: module 'numpy' has no attribute 'msort'. Do you recommend downgrading numpy? I currently have numpy 2.0.2.
Thank you
The text was updated successfully, but these errors were encountered:
numpy 2.0 deprecated a lot of the old numpy API, so it is likely to give a lot of issues.
Downgrade to a 1.x version. If you use the latest git version of pySCENIC, the latest numpy release of the 1.26.0 should normally work. Otherwise you need numpy <1.24.0.
Hi,
First time running the pySCENIC pipeline, and would like to export the loom file but having an issue when running export2loom(), Erro message is: AttributeError: module 'numpy' has no attribute 'msort'. Do you recommend downgrading numpy? I currently have numpy 2.0.2.
Thank you
The text was updated successfully, but these errors were encountered: