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[BUG] #584

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aterceros opened this issue Oct 14, 2024 · 2 comments
Open

[BUG] #584

aterceros opened this issue Oct 14, 2024 · 2 comments
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@aterceros
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aterceros commented Oct 14, 2024

Hi,
First time running the pySCENIC pipeline, and would like to export the loom file but having an issue when running export2loom(), Erro message is: AttributeError: module 'numpy' has no attribute 'msort'. Do you recommend downgrading numpy? I currently have numpy 2.0.2.
Thank you

@aterceros aterceros added the bug Something isn't working label Oct 14, 2024
@ghuls
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ghuls commented Oct 15, 2024

numpy 2.0 deprecated a lot of the old numpy API, so it is likely to give a lot of issues.
Downgrade to a 1.x version. If you use the latest git version of pySCENIC, the latest numpy release of the 1.26.0 should normally work. Otherwise you need numpy <1.24.0.

@aterceros
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thank you so much! downgrading fixed it!

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